chr9 : 96,543,037 96,543,508
471 bp 76 TFs 7 linked genes
This 471 bp open chromatin element is linked to 7 target genes and is bound by 76 transcription factors.
Linked Genes
7 genes
Gene Expression Dist. to TSS Distance Link type
CDC14B 23.5 kb Distal Multiome
HABP4 93.1 kb Distal Multiome
PRXL2C 112.0 kb Distal Multiome
ZNF367 124.9 kb Distal Multiome
ENSG00000224848 143.8 kb Distal Multiome
SLC35D2 159.6 kb Distal Multiome
ZNF510 234.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:96,538,037 – 96,548,508
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ATF4 1 dataset
ChIP K562 ENCFF674KTF 216 bp overlap
Ascl2 1 dataset
Motif DE_24h DE_24h-Ascl2_MA0816.1 10 bp overlap
CEBPE 1 dataset
Motif DE_24h DE_24h-CEBPE_MA0837.3 10 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 155 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 189 bp overlap
FEZF2 1 dataset
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
Motif DE_24h DE_24h-FOXA1_MA0148.5 8 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 443 bp overlap
ChIP DE DE-FOXA2-2 320 bp overlap
Motif DE_24h DE_24h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_24h DE_24h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_24h DE_24h-FOXD1_MA0031.2 7 bp overlap
FOXG1 1 dataset
Motif DE_24h DE_24h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_24h DE_24h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_24h DE_24h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_24h DE_24h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_24h DE_24h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_24h DE_24h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_24h DE_24h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_24h DE_24h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_24h DE_24h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_24h DE_24h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_24h DE_24h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_24h DE_24h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_24h DE_24h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_24h DE_24h-Foxj2_MA0614.1 8 bp overlap
Foxl2 1 dataset
Motif DE_24h DE_24h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_24h DE_24h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_24h DE_24h-Foxo3_MA0157.4 7 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 378 bp overlap
ChIP DE DE-GATA4-2 379 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 471 bp overlap
ChIP DE DE-GATA6-2 310 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 273 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 293 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 360 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 368 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 300 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 273 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_24h DE_24h-MSC_MA0665.1 10 bp overlap
MYF5 1 dataset
Motif DE_24h DE_24h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_24h DE_24h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif DE_24h DE_24h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
Motif DE_24h DE_24h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 246 bp overlap
NHLH1 1 dataset
Motif DE_24h DE_24h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_24h DE_24h-NHLH2_MA1529.2 16 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 72 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
PKNOX2 1 dataset
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 306 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 471 bp overlap
Ptf1A 4 datasets
Motif DE_24h DE_24h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_24h DE_24h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_24h DE_24h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_24h DE_24h-Ptf1A_MA1620.2 8 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 348 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 334 bp overlap
SNAI2 1 dataset
Motif DE_24h DE_24h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 311 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 180 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TFAP4 1 dataset
Motif DE_24h DE_24h-TFAP4_MA0691.1 10 bp overlap
TGIF1 1 dataset
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_24h DE_24h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
ZBTB18 1 dataset
Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 272 bp overlap
ChIP K562 ENCFF875HLX 184 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZNF213 1 dataset
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF708 1 dataset
Motif DE_24h DE_24h-ZNF708_MA1730.2 9 bp overlap
ZNF85 1 dataset
Motif DE_24h DE_24h-ZNF85_MA1720.2 12 bp overlap