chr9 : 81,789,630 – 81,790,369

739 bp 88 TFs 0 linked genes

This 739 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

88 transcription factors

ARID1A 1 dataset

ChIP 12Z GSE129781.ARID1A.12Z 544 bp overlap

Alx4 1 dataset

Motif DE_36h DE_36h-Alx4_MA0853.2 12 bp overlap

Arid3b 1 dataset

Motif DE_36h DE_36h-Arid3b_MA0601.2 7 bp overlap

Arx 1 dataset

Motif DE_36h DE_36h-Arx_MA0874.2 10 bp overlap

BARX1 1 dataset

Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap

BRD4 7 datasets

ChIP HCC1395 GSE63581.BRD4.HCC1395 407 bp overlap

ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 265 bp overlap

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 270 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 181 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 196 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 201 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 146 bp overlap

BSX 1 dataset

Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap

CEBPB 2 datasets

ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 324 bp overlap

ChIP hMSC GSE68864.CEBPB.hMSC 228 bp overlap

CREBBP 1 dataset

ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 232 bp overlap

DLX1 1 dataset

Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap

EN2 1 dataset

Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 525 bp overlap

EP300 1 dataset

ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 166 bp overlap

ESR1 1 dataset

ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 69 bp overlap

ETV1 1 dataset

ChIP COLO-800 GSE80443.ETV1.COLO-800 332 bp overlap

EZH2 1 dataset

ChIP GM23248 ENCFF506FWX 445 bp overlap

EZH2_phosphoT487 1 dataset

ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 341 bp overlap

FLI1 5 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 451 bp overlap

ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 168 bp overlap

ChIP A-673_D11 GSE129155.FLI1.A-673_D11 466 bp overlap

ChIP A-673_D14 GSE129155.FLI1.A-673_D14 463 bp overlap

ChIP A-673_D17 GSE129155.FLI1.A-673_D17 473 bp overlap

FOSL2 1 dataset

ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 205 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 471 bp overlap

ChIP DE DE-FOXA2-2 397 bp overlap

ChIP DE DE-FOXA2-2 275 bp overlap

GATA2 3 datasets

ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 499 bp overlap

ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 295 bp overlap

ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 503 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 494 bp overlap

ChIP DE DE-GATA4-2 739 bp overlap

GATA5 1 dataset

Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap

GATA6 11 datasets

ChIP DE DE-GATA6-1 502 bp overlap

ChIP DE DE-GATA6-2 739 bp overlap

Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 739 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 739 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 644 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 556 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 739 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 739 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 488 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 485 bp overlap

GBX1 1 dataset

Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap

GBX2 1 dataset

Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap

GPS2 1 dataset

ChIP hMADS_D0_E GSE152517.GPS2.hMADS_D0_E 168 bp overlap

Gata3 1 dataset

Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap

HESX1 1 dataset

Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap

HOXB8 1 dataset

ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 373 bp overlap

Hand1::Tcf3 2 datasets

Motif DE_60h DE_60h-Hand1Tcf3_MA0092.2 9 bp overlap

Motif DE_72h DE_72h-Hand1Tcf3_MA0092.2 9 bp overlap

Hmx1 1 dataset

Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap

Hmx2 1 dataset

Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap

ISL1 1 dataset

ChIP SK-N-SH ENCFF285GEQ 485 bp overlap

JMJD1C 1 dataset

ChIP THP-1 GSE63484.JMJD1C.THP-1 150 bp overlap

JUN 3 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 509 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 579 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 569 bp overlap

KMT2A 1 dataset

ChIP THP-1 GSE79899.KMT2A.THP-1 190 bp overlap

KMT2B 1 dataset

ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 190 bp overlap

LBX1 1 dataset

Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap

LBX2 1 dataset

Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap

LHX2 2 datasets

Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap

ChIP retina_pigment GSE60024.LHX2.retina_pigment 208 bp overlap

LHX9 1 dataset

Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap

MED1 7 datasets

ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 331 bp overlap

ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 380 bp overlap

ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 252 bp overlap

ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 281 bp overlap

ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 201 bp overlap

ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 364 bp overlap

ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 312 bp overlap

MGA::EVX1 1 dataset

Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap

MSX1 1 dataset

Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap

NANOG 2 datasets

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 443 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 278 bp overlap

NEUROD1 1 dataset

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 126 bp overlap

NFIA 1 dataset

Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap

NFIX 1 dataset

Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap

Nkx3-2 1 dataset

Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap

Nobox 1 dataset

Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap

PAX3 1 dataset

Motif DE_36h DE_36h-PAX3_MA0780.1 10 bp overlap

PHOX2A 1 dataset

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 243 bp overlap

POU5F1 2 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 294 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 475 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 270 bp overlap

PRDM1 1 dataset

ChIP fetal_testis GSE100639.PRDM1.fetal_testis 55 bp overlap

PRRX2 1 dataset

Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap

Pax7 1 dataset

Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap

RAD21 2 datasets

ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 175 bp overlap

ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 157 bp overlap

RARA 1 dataset

ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 320 bp overlap

RAX 1 dataset

Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap

RELA 1 dataset

ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 251 bp overlap

SMAD2 2 datasets

Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap

Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 452 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 571 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 343 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 315 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 303 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 474 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 400 bp overlap

SMARCA2 2 datasets

ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 314 bp overlap

ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 242 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 264 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 178 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 377 bp overlap

SMARCC1 3 datasets

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 203 bp overlap

ChIP DE_D1 S10-DE-d1-BAF155-exp1 545 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 713 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 423 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 739 bp overlap

SS18 1 dataset

ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 229 bp overlap

STAG2 1 dataset

ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 258 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 457 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 215 bp overlap

TEAD1 1 dataset

ChIP adipocyte GSE140782.TEAD1.adipocyte 246 bp overlap

TRPS1 1 dataset

Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap

VENTX 1 dataset

Motif DE_36h DE_36h-VENTX_MA0724.1 9 bp overlap

ZFP42 2 datasets

Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap

Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap

ZNF324 2 datasets

Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap

Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap

Zfp335 1 dataset

Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap