chr9 : 7,210,839 7,212,065
1,226 bp 52 TFs 0 linked genes
This 1.2 kb open chromatin element has no linked target genes and is bound by 52 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:7,205,839 – 7,217,065
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 245 bp overlap
BARHL1 1 dataset
Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 177 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 77 bp overlap
BRD4 4 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 628 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 224 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 709 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 80 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 79 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 120 bp overlap
CTCF 4 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 193 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 397 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 75 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 94 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 258 bp overlap
ChIP BLaER1 ENCFF364PUR 118 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 379 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 51 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 245 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 437 bp overlap
ChIP WTC11 ENCFF812SCD 437 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 312 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 339 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 341 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 364 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 375 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
ChIP ESC S24-ESC-d0-JUN-exp1 352 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 139 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 219 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 216 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MYBL2 1 dataset
Motif DE_12h DE_12h-MYBL2_MA0777.1 15 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 217 bp overlap
NANOG 13 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 157 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 611 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 468 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 372 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 477 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 251 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 459 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 347 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 373 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 213 bp overlap
ChIP hESC GSE20650.NANOG.hESC 203 bp overlap
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 484 bp overlap
POU5F1 10 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 252 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 1150 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 416 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 230 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 128 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 1226 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 306 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 273 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 180 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 573 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 223 bp overlap
PROX1 1 dataset
Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 270 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 414 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 290 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 231 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 236 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 274 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 307 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 208 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 294 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 195 bp overlap
SMAD3 1 dataset
Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 216 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 191 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 197 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 162 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 117 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 348 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHSPIB GSE56857.SPIB.OCI-Ly3_SHSPIB 223 bp overlap
TBP 2 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 110 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 263 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 172 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 224 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 382 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 455 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 546 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 121 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 168 bp overlap