chr8 : 85,988,190 – 85,989,087
897 bp 53 TFs 1 linked gene
This 897 bp open chromatin element is linked to ATP6V0D2 and is bound by 53 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ATP6V0D2 868 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:85,983,190 – 85,994,087
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ARNT::HIF1A 1 dataset
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
ATF4 1 dataset
Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap
CEBPB 1 dataset
ChIP monocyte_MACROPHAGE GSE31621.CEBPB.monocyte_MACROPHAGE 127 bp overlap
CEBPG 1 dataset
Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 140 bp overlap
EOMES 2 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 361 bp overlap
ERG 2 datasets
ChIP VCaP GSE49091.ERG.VCaP 151 bp overlap
ChIP VCaP GSE49091.ERG.VCaP 126 bp overlap
EZH2 5 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 897 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 205 bp overlap
ChIP SK-N-MC ENCFF674XUJ 283 bp overlap
ChIP SK-N-MC ENCFF674XUJ 509 bp overlap
ChIP SK-N-MC ENCFF674XUJ 651 bp overlap
EZH2_phosphoT487 1 dataset
ChIP HCT-116 ENCSR429CLV.EZH2_phosphoT487.HCT-116 215 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 611 bp overlap
ChIP DE DE-FOXA2-2 492 bp overlap
FOXG1 1 dataset
Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GATA2 1 dataset
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 719 bp overlap
ChIP DE DE-GATA4-2 689 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 844 bp overlap
ChIP DE DE-GATA6-2 639 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 692 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 729 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 598 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 634 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 737 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 839 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 514 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
INSM1 1 dataset
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
ISL2 1 dataset
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
JUN 6 datasets
Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 676 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 333 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 536 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 439 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 749 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 138 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 216 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
Nkx3-1 1 dataset
Motif DE_60h DE_60h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_60h DE_60h-Nkx3-2_MA0122.4 10 bp overlap
PRDM1 1 dataset
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 382 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 443 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 839 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 437 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 411 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 673 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 399 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 449 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 457 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 562 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 164 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 182 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 256 bp overlap
TBR1 2 datasets
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TCF7L2 1 dataset
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 135 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZNF16 2 datasets
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF354C 1 dataset
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
ZNF382 1 dataset
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
ZNF530 1 dataset
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
ZNF701 2 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Huangfu Lab · Publications · Resources · Contact