chr8 : 69,924,747 – 69,925,122

375 bp 84 TFs 0 linked genes

This 375 bp open chromatin element has no linked target genes and is bound by 84 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

84 transcription factors

AR 1 dataset

ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 280 bp overlap

ATOH7 1 dataset

Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap

Alx1 1 dataset

Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap

Alx4 2 datasets

Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap

Arid3a 1 dataset

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

Arx 1 dataset

Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap

Atoh1 1 dataset

Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BCOR 2 datasets

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 133 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 170 bp overlap

BHLHA15 1 dataset

Motif DE_12h DE_12h-BHLHA15_MA0607.2 10 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap

BHLHE23 1 dataset

Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap

BRD4 1 dataset

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 375 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CEBPA 1 dataset

ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 216 bp overlap

CTCF 1 dataset

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 168 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF262VBH 87 bp overlap

ChIP BLaER1 ENCFF364PUR 126 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 127 bp overlap

FERD3L 1 dataset

Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

HDAC2 1 dataset

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

HOXB13 1 dataset

Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap

HOXB4 1 dataset

Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap

Hmx1 1 dataset

Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap

Hmx2 1 dataset

Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap

IRF3 1 dataset

Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 3 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 60 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 118 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 183 bp overlap

NEUROG1 1 dataset

Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap

NEUROG2 1 dataset

Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap

NKX6-1 1 dataset

Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap

NR1H4::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H4RXRA_MA1146.2 13 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

OLIG1 1 dataset

Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap

OLIG2 1 dataset

Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap

OLIG3 1 dataset

Motif DE_12h DE_12h-OLIG3_MA0827.1 10 bp overlap

PBX3 1 dataset

Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap

PDX1 1 dataset

ChIP hiPSC GSE125768.PDX1.hiPSC 199 bp overlap

PKNOX1 1 dataset

Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap

PKNOX2 1 dataset

Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU5F1 4 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 359 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 335 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 375 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 302 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 351 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap

RAD21 1 dataset

ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 163 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 212 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000EBO.SIN3A.WA01 116 bp overlap

SMARCA4 1 dataset

ChIP NSC GSE125033.SMARCA4.NSC 181 bp overlap

SP1 1 dataset

Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap

SP2 1 dataset

Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

TAL1::TCF3 1 dataset

Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap

TCF21 1 dataset

Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap

TFAP4 1 dataset

Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap

TGIF1 1 dataset

Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap

TGIF2LX 1 dataset

Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap

TGIF2LY 1 dataset

Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap

TP53 1 dataset

ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 170 bp overlap

YY1 1 dataset

ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 131 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap