chr1 : 165,350,948 – 165,351,178
230 bp 45 TFs 1 linked gene
This 230 bp open chromatin element is linked to LMX1A and is bound by 45 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LMX1A 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:165,345,948 – 165,356,178
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 110 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 209 bp overlap
BRD4 2 datasets
ChIP NMC24335 GSE96775.BRD4.NMC24335 230 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 167 bp overlap
CBX7 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 230 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 76 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 124 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 230 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 230 bp overlap
DDX5 1 dataset
ChIP BT-549 GSE112961.DDX5.BT-549 93 bp overlap
EZH2 6 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 195 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 230 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 230 bp overlap
ChIP neural progenitor cell ENCFF472NFV 230 bp overlap
ChIP neural progenitor cell ENCFF472NFV 230 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 181 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 61 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 230 bp overlap
ChIP DE DE-FOXA2-2 230 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 151 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 230 bp overlap
ChIP DE DE-GATA4-2 230 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 230 bp overlap
ChIP DE DE-GATA6-2 230 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 230 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 222 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 204 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 230 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 173 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 198 bp overlap
MEF2D 1 dataset
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 193 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 230 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 230 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 123 bp overlap
MYOG 2 datasets
ChIP RH4 GSE83726.MYOG.RH4 197 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 230 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 230 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 182 bp overlap
ChIP H1 ENCFF747ZPQ 213 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 230 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 230 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 230 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 230 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 230 bp overlap
ChIP hESC GSE18292.NANOG.hESC 188 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 172 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 79 bp overlap
PCGF2 2 datasets
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 230 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 114 bp overlap
POU5F1 7 datasets
ChIP GM23338 ENCFF333SNB 230 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 230 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 230 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 113 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 230 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 230 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 104 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 214 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 230 bp overlap
RNF2 1 dataset
ChIP A-549 ENCSR798EGJ.RNF2.A-549 230 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 230 bp overlap
ChIP H1 ENCFF042ZSL 130 bp overlap
ChIP H1 ENCFF896IJG 199 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 151 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 106 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 230 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 115 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 217 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 230 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 230 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 230 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 132 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 230 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 230 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 230 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 112 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 138 bp overlap
SUZ12 4 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 203 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 230 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 230 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 219 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 225 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 202 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 230 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 134 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 106 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 186 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 183 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 167 bp overlap
ZNF680 1 dataset
ChIP HEK293 GSE76494.ZNF680.HEK293 115 bp overlap
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