chr1 : 154,683,607 154,684,346
739 bp 39 TFs 10 linked genes
This 739 bp open chromatin element is linked to 10 target genes and is bound by 39 transcription factors.
Linked Genes
10 genes
Gene Expression Dist. to TSS Distance Link type
ADAR 56.1 kb Distal Multiome
UBE2Q1 125.4 kb Distal Multiome
SHE 181.6 kb Distal Multiome
KCNN3 186.3 kb Distal Multiome
PMVK 252.7 kb Distal Multiome
PBXIP1 272.1 kb Distal Multiome
PYGO2 277.8 kb Distal Multiome
SHC1 290.3 kb Distal Multiome
CKS1B 290.7 kb Distal Multiome
FLAD1 299.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:154,678,607 – 154,689,346
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 251 bp overlap
AR 1 dataset
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 186 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 199 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 493 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 180 bp overlap
ChIP BLaER1 ENCFF335XTP 278 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 334 bp overlap
EZH2 3 datasets
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 101 bp overlap
ChIP T98G GSE112240.EZH2.T98G 207 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 216 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 441 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 237 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 672 bp overlap
ChIP DE DE-FOXA2-2 666 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 629 bp overlap
ChIP DE DE-GATA4-2 696 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 328 bp overlap
ChIP foregut GSE117136.GATA4.foregut 412 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 447 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 428 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 247 bp overlap
ChIP AGS GSE51936.GATA6.AGS 86 bp overlap
ChIP DE DE-GATA6-1 669 bp overlap
ChIP DE DE-GATA6-2 730 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 488 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 368 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 535 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 573 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 464 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 535 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 583 bp overlap
ChIP foregut GSE117136.GATA6.foregut 469 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 451 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 321 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 205 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHG.NR3C1.A-549 128 bp overlap
PGR 1 dataset
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 162 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 149 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 418 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 359 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 302 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 172 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 673 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 443 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 358 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 590 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 609 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 189 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 419 bp overlap
SNAPC4 1 dataset
ChIP MCF-10A GSE37403.SNAPC4.MCF-10A 251 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 456 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 504 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 278 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 251 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 260 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 164 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 544 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 297 bp overlap
ZFP3 3 datasets
ChIP HEK293 ENCFF345CRU 357 bp overlap
ChIP HEK293 ENCFF345CRU 314 bp overlap
ChIP HEK293 ENCSR134QIE.ZFP3.HEK293 380 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 470 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 155 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 224 bp overlap