chr7 : 48,038,675 48,039,550
875 bp 70 TFs 3 linked genes
This 875 bp open chromatin element is linked to C7orf57, UPP1, and HUS1 and is bound by 70 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
C7orf57 3.2 kb Proximal Proximity
UPP1 50.2 kb Distal Multiome+HiCAR
HUS1 59.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:48,033,675 – 48,044,550
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 785 bp overlap
ChIP H1 ENCFF399KAM 450 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 351 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BARX2 1 dataset
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
BCL6B 1 dataset
Motif DE_24h DE_24h-BCL6B_MA0731.1 17 bp overlap
CUX1 1 dataset
Motif DE_24h DE_24h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif DE_24h DE_24h-CUX2_MA0755.2 9 bp overlap
DUXA 1 dataset
Motif DE_24h DE_24h-DUXA_MA0884.2 13 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 331 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXP2 1 dataset
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
GATA2 2 datasets
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
Motif DE_24h DE_24h-GATA2_MA0036.4 7 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 512 bp overlap
ChIP DE DE-GATA4-2 698 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 225 bp overlap
GATA5 5 datasets
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 542 bp overlap
ChIP DE DE-GATA6-2 725 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 679 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 793 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 655 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 632 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 642 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 516 bp overlap
Gata3 5 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 5 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HOXA4 1 dataset
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif ES_0h ES_0h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif ES_0h ES_0h-HOXC10_MA0905.2 9 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif ES_0h ES_0h-HOXC9_MA0485.3 9 bp overlap
HOXD11 1 dataset
Motif ES_0h ES_0h-HOXD11_MA0908.2 9 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Hoxa11 1 dataset
Motif ES_0h ES_0h-Hoxa11_MA0911.2 9 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 372 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 368 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 339 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 378 bp overlap
MEIS1 8 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap
MITF 2 datasets
ChIP 501-mel GSE137522.MITF.501-mel 314 bp overlap
Motif ES_0h ES_0h-MITF_MA0620.4 10 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
Mecom 2 datasets
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
Motif DE_24h DE_24h-Mecom_MA0029.2 11 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 710 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 278 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 207 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NKX6-1 1 dataset
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 455 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
POU2F1::SOX2 5 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_60h DE_60h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 10 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 396 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 875 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 454 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 194 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 188 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 332 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 589 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 227 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 322 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
Pou5f1::Sox2 5 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
SIX1 1 dataset
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 630 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 775 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 746 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 787 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 688 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 698 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 647 bp overlap
SMARCA4 2 datasets
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 253 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 188 bp overlap
SMARCB1 2 datasets
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 326 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 167 bp overlap
SMARCC1 2 datasets
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 198 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 226 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 273 bp overlap
SOX2 2 datasets
ChIP hiPSC GSE56567.SOX2.hiPSC 301 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 236 bp overlap
SP1 1 dataset
ChIP H1 ENCFF263FUH 321 bp overlap
SREBF1 1 dataset
Motif ES_0h ES_0h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif ES_0h ES_0h-SREBF2_MA0828.3 10 bp overlap
Six4 1 dataset
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TFE3 1 dataset
Motif ES_0h ES_0h-TFE3_MA0831.3 10 bp overlap
TFEB 1 dataset
Motif ES_0h ES_0h-TFEB_MA0692.2 8 bp overlap
TGIF1 1 dataset
Motif ES_0h ES_0h-TGIF1_MA0796.1 12 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1575.2 17 bp overlap
TRPS1 5 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
USF1 4 datasets
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 161 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 453 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
USF2 4 datasets
Motif ES_0h ES_0h-USF2_MA0526.5 10 bp overlap
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 122 bp overlap
ChIP WTC11 ENCFF139JAW 140 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF317 1 dataset
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF384 1 dataset
Motif ES_0h ES_0h-ZNF384_MA1125.2 8 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZNF768 5 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap