chr7 : 28,672,232 28,672,811
579 bp 49 TFs 0 linked genes
This 579 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:28,667,232 – 28,677,811
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 509 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 136 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 425 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 516 bp overlap
CDK8 1 dataset
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 122 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 196 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 159 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 344 bp overlap
CREB5 3 datasets
ChIP SK-N-SH ENCFF144PMI 345 bp overlap
ChIP SK-N-SH ENCFF144PMI 338 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 514 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 201 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 277 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 259 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 258 bp overlap
CSDC2 2 datasets
ChIP SK-N-SH ENCFF868MXA 351 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 521 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 336 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 123 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 213 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 214 bp overlap
ESRRG 2 datasets
ChIP SK-N-SH ENCFF394HLU 285 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 397 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 576 bp overlap
ChIP DE DE-FOXA2-2 278 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 532 bp overlap
ChIP DE DE-GATA4-2 571 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 518 bp overlap
ChIP DE DE-GATA6-2 579 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 502 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 485 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 221 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 247 bp overlap
GLIS3 3 datasets
ChIP H9_plus GSE109562.GLIS3.H9_plus 251 bp overlap
ChIP SK-N-SH ENCFF370MHZ 285 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 334 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 224 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 419 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 216 bp overlap
MED12 1 dataset
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 57 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 181 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 254 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 251 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 253 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 208 bp overlap
PATZ1 1 dataset
ChIP SK-N-SH ENCFF650NCN 365 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 278 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 166 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 162 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 215 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 420 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 376 bp overlap
SMARCA4 2 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 419 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 258 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 337 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 465 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 534 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 453 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 249 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 256 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 297 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 518 bp overlap
YY1 2 datasets
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 159 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 430 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 441 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 500 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 579 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 331 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 168 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 90 bp overlap