chr7 : 28,044,923 – 28,045,244
321 bp 61 TFs 0 linked genes
This 321 bp open chromatin element has no linked target genes and is bound by 61 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:28,039,923 – 28,050,244
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 75 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 57 bp overlap
CTCF 69 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 175 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 259 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 210 bp overlap
ChIP A-549 ENCSR000BHV.CTCF.A-549 127 bp overlap
ChIP A-549 ENCSR000BHW.CTCF.A-549 178 bp overlap
ChIP A-549 ENCSR000DYD.CTCF.A-549 145 bp overlap
ChIP A549 ENCFF034FVO 265 bp overlap
ChIP A549 ENCFF034FVO 176 bp overlap
ChIP A549 ENCFF434LUY 204 bp overlap
ChIP A549 ENCFF669BWC 321 bp overlap
ChIP A549 ENCFF669BWC 251 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 147 bp overlap
ChIP GM23338 ENCFF531QOI 165 bp overlap
ChIP GM23338 ENCFF772DML 133 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 194 bp overlap
ChIP H1 ENCFF414GZI 184 bp overlap
ChIP H1 ENCFF764RHO 224 bp overlap
ChIP H9 ENCFF152GTF 186 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 141 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 158 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 177 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 129 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 194 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 190 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 181 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 181 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 139 bp overlap
ChIP HeLa-S3 ENCFF565UFR 144 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 181 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 251 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 146 bp overlap
ChIP K562 ENCFF400DFR 206 bp overlap
ChIP Loucy ENCFF359TVQ 193 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 289 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 158 bp overlap
ChIP MCF-7 ENCFF162GNE 188 bp overlap
ChIP MCF-7 ENCFF198DQX 178 bp overlap
ChIP MCF-7 ENCFF494VXA 178 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 172 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 147 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 182 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 281 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 207 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 219 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 183 bp overlap
ChIP Panc1 ENCFF056JQX 221 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 181 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 295 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 120 bp overlap
ChIP SK-N-SH ENCFF731NJX 215 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 174 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 155 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 128 bp overlap
ChIP endodermal cell ENCFF471YCZ 285 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 171 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 143 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 264 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 161 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 134 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 163 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 161 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 151 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 154 bp overlap
ChIP neural progenitor cell ENCFF420RBO 275 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 179 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 133 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 155 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 149 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
IKZF2 3 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 196 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 302 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 321 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 321 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
NFIC::TLX1 1 dataset
Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 161 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1538.1 15 bp overlap
NR2F6 1 dataset
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
NR4A2::RXRA 1 dataset
Motif DE_12h DE_12h-NR4A2RXRA_MA1147.2 13 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 240 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 248 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 14 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 188 bp overlap
ChIP A549 ENCFF047SFC 200 bp overlap
ChIP H1 ENCFF698EWO 188 bp overlap
ChIP H1 ENCFF967OJF 210 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 171 bp overlap
ChIP HCT116 ENCFF568PEO 222 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 319 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 136 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 134 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 201 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 223 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 194 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 137 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 176 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
REST 1 dataset
ChIP neural cell ENCFF882LXX 160 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 213 bp overlap
SMARCA4 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 113 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 285 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 164 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 186 bp overlap
SMC3 2 datasets
ChIP A549 ENCFF079FKB 249 bp overlap
ChIP A549 ENCFF079FKB 304 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 164 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 164 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 131 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 129 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 287 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
ZKSCAN5 1 dataset
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF487 1 dataset
ChIP HEK293T GSE78099.ZNF487.HEK293T 193 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF765 1 dataset
ChIP HEK293T GSE78099.ZNF765.HEK293T 149 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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