chr6 : 160,765,228 – 160,765,951
723 bp 63 TFs 7 linked genes
This 723 bp open chromatin element is linked to 7 target genes and is bound by 63 transcription factors.
Linked Genes
7 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287558 1.5 kb Proximal Proximity
ENSG00000224371 114.8 kb Distal Multiome
ENSG00000292246 117.6 kb Distal Multiome
ENSG00000233342 160.7 kb Distal Multiome
ENSG00000231863 165.5 kb Distal Multiome
MAP3K4 226.1 kb Distal Multiome
MAP3K4-AS1 226.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:160,760,228 – 160,770,951
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ARNT::HIF1A 2 datasets
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
Arid3a 3 datasets
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
CTCF 36 datasets
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
ChIP GM06990 ENCFF471OQT 297 bp overlap
ChIP GM23338 ENCFF772DML 81 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 114 bp overlap
ChIP H9 ENCFF152GTF 427 bp overlap
ChIP H9 ENCFF152GTF 128 bp overlap
ChIP HCT116 ENCFF209YMI 285 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 247 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 137 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 125 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF194VBQ 311 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 138 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 218 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 478 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 430 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 172 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 235 bp overlap
ChIP Panc1 ENCFF056JQX 701 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 129 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 149 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 94 bp overlap
ChIP endodermal cell ENCFF471YCZ 257 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 199 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 137 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
EBF3 1 dataset
Motif DE_36h DE_36h-EBF3_MA1637.2 9 bp overlap
ETV5::FIGLA 3 datasets
Motif DE_36h DE_36h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_48h DE_48h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap
Ebf2 1 dataset
Motif DE_36h DE_36h-Ebf2_MA1604.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 440 bp overlap
ChIP DE DE-FOXA2-2 537 bp overlap
FOXH1 3 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
FOXN3 3 datasets
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
FOXP2 3 datasets
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
Foxj2 3 datasets
Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap
Motif DE_48h DE_48h-Foxj2_MA0614.1 8 bp overlap
Motif DE_60h DE_60h-Foxj2_MA0614.1 8 bp overlap
Foxj3 3 datasets
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
Motif DE_48h DE_48h-Foxj3_MA0851.2 9 bp overlap
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 548 bp overlap
ChIP DE DE-GATA4-2 607 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 289 bp overlap
GATA5 3 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 723 bp overlap
ChIP DE DE-GATA6-2 648 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 445 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 501 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 457 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 649 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 547 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 449 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 615 bp overlap
ChIP foregut GSE117136.GATA6.foregut 350 bp overlap
GLIS2 3 datasets
Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap
Motif DE_48h DE_48h-GLIS2_MA0736.1 14 bp overlap
Motif DE_60h DE_60h-GLIS2_MA0736.1 14 bp overlap
GLIS3 3 datasets
Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap
Motif DE_48h DE_48h-GLIS3_MA0737.1 14 bp overlap
Motif DE_60h DE_60h-GLIS3_MA0737.1 14 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 153 bp overlap
HSF1 2 datasets
Motif DE_36h DE_36h-HSF1_MA0486.2 13 bp overlap
Motif DE_48h DE_48h-HSF1_MA0486.2 13 bp overlap
HSF2 2 datasets
Motif DE_36h DE_36h-HSF2_MA0770.1 13 bp overlap
Motif DE_48h DE_48h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_36h DE_36h-HSF4_MA0771.1 13 bp overlap
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
Hmx2 3 datasets
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
KLF5 3 datasets
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Lhx3 3 datasets
Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap
Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MAF 3 datasets
Motif DE_36h DE_36h-MAF_MA1520.2 13 bp overlap
Motif DE_48h DE_48h-MAF_MA1520.2 13 bp overlap
Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap
MAFA 3 datasets
Motif DE_36h DE_36h-MAFA_MA1521.2 13 bp overlap
Motif DE_48h DE_48h-MAFA_MA1521.2 13 bp overlap
Motif DE_60h DE_60h-MAFA_MA1521.2 13 bp overlap
MEIS1 3 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS2 3 datasets
Motif DE_36h DE_36h-MEIS2_MA0774.1 8 bp overlap
Motif DE_48h DE_48h-MEIS2_MA0774.1 8 bp overlap
Motif DE_60h DE_60h-MEIS2_MA0774.1 8 bp overlap
MEIS3 3 datasets
Motif DE_36h DE_36h-MEIS3_MA0775.2 7 bp overlap
Motif DE_48h DE_48h-MEIS3_MA0775.2 7 bp overlap
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
MXI1 1 dataset
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
NFATC3 3 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NFATC4 3 datasets
Motif DE_36h DE_36h-NFATC4_MA1525.3 9 bp overlap
Motif DE_48h DE_48h-NFATC4_MA1525.3 9 bp overlap
Motif DE_60h DE_60h-NFATC4_MA1525.3 9 bp overlap
Nanog 3 datasets
Motif DE_36h DE_36h-Nanog_MA2339.1 7 bp overlap
Motif DE_48h DE_48h-Nanog_MA2339.1 7 bp overlap
Motif DE_60h DE_60h-Nanog_MA2339.1 7 bp overlap
Nfatc1 3 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 3 datasets
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Nr2e3 2 datasets
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 119 bp overlap
PHOX2A 3 datasets
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
POU3F1 3 datasets
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 3 datasets
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 3 datasets
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
PROP1 4 datasets
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 185 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 90 bp overlap
RBPJ 3 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
RELB 1 dataset
Motif DE_36h DE_36h-RELB_MA1117.2 7 bp overlap
RORB 3 datasets
Motif DE_36h DE_36h-RORB_MA1150.2 10 bp overlap
Motif DE_48h DE_48h-RORB_MA1150.2 10 bp overlap
Motif DE_60h DE_60h-RORB_MA1150.2 10 bp overlap
RUNX3 1 dataset
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 516 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 447 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 270 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 294 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 322 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 490 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 711 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 169 bp overlap
SOX10 3 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 264 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 456 bp overlap
SP5 3 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
THAP11 1 dataset
ChIP HEK293_THAP11-F80L GSE138205.THAP11.HEK293_THAP11-F80L 73 bp overlap
TP73 1 dataset
Motif DE_36h DE_36h-TP73_MA0861.2 16 bp overlap
ZFP14 2 datasets
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
ZNF282 1 dataset
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
ZNF547 3 datasets
Motif DE_36h DE_36h-ZNF547_MA2334.1 13 bp overlap
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
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