The central core of each mitogen-activated protein kinase (MAPK) pathway is a conserved cascade of 3 protein kinases: an activated MAPK kinase kinase (MAPKKK) phosphorylates and activates a specific MAPK kinase (MAPKK), which then activates a specific MAPK. While the ERK MAPKs are activated by mitogenic stimulation, the CSBP2 and JNK MAPKs are activated by environmental stresses such as osmotic shock, UV irradiation, wound stress, and inflammatory factors. This gene encodes a MAPKKK, the MEKK4 protein, also called MTK1. This protein contains a protein kinase catalytic domain at the C terminus. The N-terminal nonkinase domain may contain a regulatory domain. Expression of MEKK4 in mammalian cells activated the CSBP2 and JNK MAPK pathways, but not the ERK pathway. In vitro kinase studies indicated that recombinant MEKK4 can specifically phosphorylate and activate PRKMK6 and SERK1, MAPKKs that activate CSBP2 and JNK, respectively but cannot phosphorylate PRKMK1, an MAPKK that activates ERKs. MEKK4 is a major mediator of environmental stresses that activate the CSBP2 MAPK pathway, and a minor mediator of the JNK pathway. Several alternatively spliced transcripts encoding distinct isoforms have been described. [provided by RefSeq, May 2014]
Transcription factors with Perturb-seq knockdown data for MAP3K4. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MAP3K4 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MAP3K4, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr6:160,765,228–160,765,951 | 226.1 kb | Distal (>10kb) Multiome | 63 | |
| chr6:160,766,832–160,767,914 | 224.3 kb | Distal (>10kb) Multiome | 438 | |
| chr6:160,877,554–160,878,055 | 113.9 kb | Distal (>10kb) Multiome | 62 | |
| chr6:160,882,741–160,883,759 | 108.7 kb | Distal (>10kb) Multiome | 224 | |
| chr6:160,930,570–160,931,847 | 60.8 kb | Distal (>10kb) Multiome | 424 | |
| chr6:160,932,951–160,933,887 | 58.3 kb | Distal (>10kb) Multiome | 76 | |
| chr6:160,973,120–160,974,206 | 18.2 kb | Distal (>10kb) Multiome | 262 | |
| chr6:160,975,941–160,976,668 | 15.5 kb | Distal (>10kb) Multiome | 101 | |
| chr6:160,991,139–160,992,602 | 165 bp | At TSS Multiome | 919 | |
| chr6:160,992,862–160,993,050 | 1.1 kb | Proximal (<10kb) | 259 | |
| chr6:161,011,600–161,012,221 | 20.1 kb | Distal (>10kb) Multiome | 101 | |
| chr6:161,243,176–161,243,910 | 251.8 kb | Distal (>10kb) Multiome | 194 | |
| chr6:161,272,174–161,274,561 | 281.0 kb | Distal (>10kb) Multiome | 687 |
Genomic view of the MAP3K4 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.