chr6 : 52,675,296 – 52,676,107
811 bp 62 TFs 2 linked genes
This 811 bp open chromatin element is linked to TMEM14A and TRAM2 and is bound by 62 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TMEM14A 4.2 kb Proximal Proximity
TRAM2 98.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:52,670,296 – 52,681,107
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 148 bp overlap
ATF2 2 datasets
Motif DE_36h DE_36h-ATF2_MA1632.2 10 bp overlap
Motif DE_48h DE_48h-ATF2_MA1632.2 10 bp overlap
Ahr::Arnt 2 datasets
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
Ascl2 2 datasets
Motif DE_36h DE_36h-Ascl2_MA0816.1 10 bp overlap
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 2 datasets
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
BRD4 1 dataset
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 80 bp overlap
CTCF 108 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 164 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 289 bp overlap
ChIP A673 ENCFF123WOM 282 bp overlap
ChIP A673 ENCFF123WOM 441 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 102 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 137 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 249 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 284 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 190 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 161 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 167 bp overlap
ChIP GM23338 ENCFF531QOI 142 bp overlap
ChIP GM23338 ENCFF832KWE 491 bp overlap
ChIP GM23338 ENCFF832KWE 605 bp overlap
ChIP H9 ENCFF152GTF 220 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 214 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 192 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 219 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 163 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 239 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 198 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 242 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 239 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 194 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 276 bp overlap
ChIP HCT116 ENCFF003KHP 311 bp overlap
ChIP HEC-1-B_F-mutation GSE140868.CTCF.HEC-1-B_F-mutation 65 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 139 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 193 bp overlap
ChIP HFFc6 ENCFF005CJI 368 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 288 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 189 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 179 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 124 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 216 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 199 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 150 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 305 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 144 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 226 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 105 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 63 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 123 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 158 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 255 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 123 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 110 bp overlap
ChIP K-562_15923 GSE131349.CTCF.K-562_15923 99 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 136 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 103 bp overlap
ChIP K-562_8004 GSE131349.CTCF.K-562_8004 101 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 169 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 313 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 252 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 203 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 277 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 287 bp overlap
ChIP K562 ENCFF111MGE 245 bp overlap
ChIP K562 ENCFF400DFR 166 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 152 bp overlap
ChIP Loucy ENCFF359TVQ 294 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 438 bp overlap
ChIP MCF-7 ENCFF162GNE 198 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 265 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 267 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 428 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 517 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 275 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 190 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 273 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 278 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 265 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 235 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 151 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 247 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 142 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 276 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 191 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 147 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 218 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 241 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 147 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 230 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 120 bp overlap
ChIP endodermal cell ENCFF471YCZ 245 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 171 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 163 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 133 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 108 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 128 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 137 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 160 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 224 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 222 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 160 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 233 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 218 bp overlap
ChIP neural crest cell ENCFF182LWK 298 bp overlap
ChIP neural crest cell ENCFF182LWK 471 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 251 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 161 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 281 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 222 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 240 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 318 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 346 bp overlap
ETV5::DRGX 2 datasets
Motif DE_36h DE_36h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_48h DE_48h-ETV5DRGX_MA1944.2 12 bp overlap
FERD3L 2 datasets
Motif DE_36h DE_36h-FERD3L_MA1485.1 14 bp overlap
Motif DE_48h DE_48h-FERD3L_MA1485.1 14 bp overlap
FLI1::DRGX 2 datasets
Motif DE_36h DE_36h-FLI1DRGX_MA1949.2 14 bp overlap
Motif DE_48h DE_48h-FLI1DRGX_MA1949.2 14 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 464 bp overlap
ChIP DE DE-FOXA2-2 427 bp overlap
GATA2 1 dataset
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 273 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 642 bp overlap
ChIP DE DE-GATA4-2 604 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 612 bp overlap
ChIP DE DE-GATA6-2 568 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 599 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 594 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 647 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 606 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 487 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 446 bp overlap
HAND2 3 datasets
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HIC2 2 datasets
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
Motif DE_48h DE_48h-HIC2_MA0738.2 6 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 174 bp overlap
Hic1 3 datasets
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
Motif DE_48h DE_48h-Hic1_MA0739.2 8 bp overlap
Motif DE_60h DE_60h-Hic1_MA0739.2 8 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 166 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 472 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 526 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 365 bp overlap
KLF3 2 datasets
Motif DE_36h DE_36h-KLF3_MA1516.2 10 bp overlap
Motif DE_48h DE_48h-KLF3_MA1516.2 10 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
MAZ 1 dataset
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
MEIS1 4 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 348 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 264 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 715 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 203 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 497 bp overlap
ChIP hESC GSE18292.NANOG.hESC 151 bp overlap
NHLH1 2 datasets
Motif DE_36h DE_36h-NHLH1_MA0048.3 9 bp overlap
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
NR2F1 2 datasets
Motif DE_36h DE_36h-NR2F1_MA1538.1 15 bp overlap
Motif DE_48h DE_48h-NR2F1_MA1538.1 15 bp overlap
Neurod2 2 datasets
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Olig2 2 datasets
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
PATZ1 1 dataset
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 156 bp overlap
PCBP2 1 dataset
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 112 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 257 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 348 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 772 bp overlap
Rarg 1 dataset
Motif DE_36h DE_36h-Rarg_MA0860.1 17 bp overlap
Runx1 3 datasets
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 452 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 169 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 478 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 461 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 438 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 749 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 374 bp overlap
SP4 1 dataset
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
STAG1 1 dataset
ChIP CHRF28811 ERP008568.STAG1.CHRF28811 213 bp overlap
Stat6 3 datasets
Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
Motif DE_60h DE_60h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 193 bp overlap
Tbx6 3 datasets
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Tcf12 2 datasets
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Wt1 1 dataset
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
ZBTB26 1 dataset
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 125 bp overlap
ZIC1 2 datasets
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
ZKSCAN1 2 datasets
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF148 1 dataset
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 260 bp overlap
ZNF701 3 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
ZNF93 2 datasets
Motif DE_36h DE_36h-ZNF93_MA1721.2 14 bp overlap
Motif DE_48h DE_48h-ZNF93_MA1721.2 14 bp overlap
Zic2 2 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
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