chr6 : 46,012,775 46,013,254
479 bp 48 TFs 1 linked gene
This 479 bp open chromatin element is linked to CLIC5 and is bound by 48 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CLIC5 2.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:46,007,775 – 46,018,254
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AR 40 datasets
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 145 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 133 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 256 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 119 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 181 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 310 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 154 bp overlap
ChIP LNCaP_DHT GSE83860.AR.LNCaP_DHT 177 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 214 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 127 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 213 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 192 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 94 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 142 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 342 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 242 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 157 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 221 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 186 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 161 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 256 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 182 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 86 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 179 bp overlap
ChIP VCaP GSE32892.AR.VCaP 147 bp overlap
ChIP VCaP-LTAD_DHT_10nM GSE94577.AR.VCaP-LTAD_DHT_10nM 223 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 138 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 218 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 220 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 369 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 179 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 138 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 272 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 250 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 242 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 263 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 156 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 170 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 231 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 172 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 205 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 274 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 137 bp overlap
CEBPA 1 dataset
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 92 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 258 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 112 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 233 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 303 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 375 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 222 bp overlap
EP300 4 datasets
ChIP HeLa-S3 ENCFF089VPQ 325 bp overlap
ChIP HeLa-S3 ENCFF245KNK 155 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 479 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 477 bp overlap
EZH2 1 dataset
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 165 bp overlap
FOS 2 datasets
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 113 bp overlap
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 132 bp overlap
FOXA1 7 datasets
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 158 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 221 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 256 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 130 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 167 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 53 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 222 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 331 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 372 bp overlap
ChIP DE DE-FOXA2-1 479 bp overlap
GATA1 2 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 182 bp overlap
GATA2 6 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 283 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 283 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 321 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 323 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 312 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 309 bp overlap
GATA3 6 datasets
ChIP MCF-7 ENCFF352QVM 361 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 342 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 262 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 211 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 302 bp overlap
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 189 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 275 bp overlap
ChIP DE DE-GATA4-1 432 bp overlap
ChIP DE DE-GATA4-2 445 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 406 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 323 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 169 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 301 bp overlap
ChIP DE DE-GATA6-1 350 bp overlap
ChIP DE DE-GATA6-2 371 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 454 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 479 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 479 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 468 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 479 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 479 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 479 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 401 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 398 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 127 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 199 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 479 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 479 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 220 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 277 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 187 bp overlap
MAX 2 datasets
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 101 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 171 bp overlap
MED1 1 dataset
ChIP LNCaP_Veh GSE125245.MED1.LNCaP_Veh 126 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 369 bp overlap
MYC 2 datasets
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 118 bp overlap
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 182 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 100 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 297 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 404 bp overlap
POLR2A 1 dataset
ChIP heart left ventricle ENCFF591JWH 257 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 120 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 341 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 385 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 329 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 479 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 380 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 285 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 274 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 199 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 272 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 479 bp overlap
STAT3 2 datasets
ChIP HeLa-S3 ENCFF655DGU 337 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 413 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 234 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCFF715NNJ 381 bp overlap
TCF7L2 2 datasets
ChIP HeLa-S3 ENCFF673QAB 464 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 327 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 203 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 252 bp overlap