chr6 : 28,766,057 – 28,766,737
680 bp 45 TFs 3 linked genes
This 680 bp open chromatin element is linked to TRIM27, SCAND3, and ZNF311 and is bound by 45 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TRIM27 157.4 kb Distal Multiome
SCAND3 179.2 kb Distal Multiome
ZNF311 238.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:28,761,057 – 28,771,737
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 152 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 204 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 169 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 81 bp overlap
BRD4 3 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 160 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 86 bp overlap
ChIP VCaP GSE148358.BRD4.VCaP 106 bp overlap
BRD7 2 datasets
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 162 bp overlap
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 181 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 113 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 138 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF844FIP 130 bp overlap
ChIP BLaER1 ENCFF896HSY 185 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 107 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 146 bp overlap
EZH2 20 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 173 bp overlap
ChIP GM23338 ENCFF613YON 195 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 96 bp overlap
ChIP H1 ENCFF232NZA 680 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 121 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 210 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 170 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 174 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 160 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 370 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 116 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 234 bp overlap
ChIP hepatocyte ENCFF552DZB 662 bp overlap
ChIP hepatocyte ENCFF552DZB 114 bp overlap
ChIP keratinocyte ENCFF070STK 58 bp overlap
ChIP keratinocyte ENCFF070STK 298 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 154 bp overlap
ChIP neural progenitor cell ENCFF018MKA 256 bp overlap
ChIP neural progenitor cell ENCFF472NFV 680 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 218 bp overlap
EZH2_phosphoT487 2 datasets
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 94 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 234 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 599 bp overlap
ChIP DE DE-FOXA2-2 623 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 579 bp overlap
ChIP DE DE-GATA4-2 680 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 426 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 247 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 482 bp overlap
ChIP DE DE-GATA6-2 567 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 680 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 587 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 680 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 680 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 615 bp overlap
ChIP foregut GSE117136.GATA6.foregut 270 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 284 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 227 bp overlap
HMBOX1 5 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 180 bp overlap
ChIP K562 ENCFF055GAZ 362 bp overlap
ChIP K562 ENCFF055GAZ 115 bp overlap
ChIP K562 ENCFF317JJX 416 bp overlap
ChIP K562 ENCFF317JJX 57 bp overlap
HOXB13 2 datasets
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 131 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 119 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 79 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 109 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 307 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 135 bp overlap
NANOG 3 datasets
ChIP GM23338 ENCFF065NZG 268 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 307 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 255 bp overlap
PCGF1 2 datasets
ChIP WA01 GSE104690.PCGF1.WA01 253 bp overlap
ChIP WA01 GSE104690.PCGF1.WA01 75 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 163 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 228 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 235 bp overlap
PRDM1 1 dataset
ChIP HEK293 GSE76494.PRDM1.HEK293 91 bp overlap
REST 33 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 163 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 184 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 129 bp overlap
ChIP H1 ENCFF429RUE 156 bp overlap
ChIP HEK293 ENCFF073DOT 328 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 291 bp overlap
ChIP HL-60 ENCFF589LOF 135 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 178 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 106 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 170 bp overlap
ChIP Ishikawa ENCFF456OHV 161 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 185 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 181 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 175 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 184 bp overlap
ChIP K562 ENCFF430APM 63 bp overlap
ChIP K562 ENCFF688UKW 183 bp overlap
ChIP K562 ENCFF758CZL 394 bp overlap
ChIP LNCaP GSE119385.REST.LNCaP 257 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 214 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 208 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 179 bp overlap
ChIP PFSK-1 ENCFF668WMP 217 bp overlap
ChIP PFSK-1 ENCFF845VHA 201 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 220 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 178 bp overlap
ChIP Panc1 ENCFF338WSQ 101 bp overlap
ChIP Panc1 ENCFF518EEQ 143 bp overlap
ChIP Panc1 ENCFF629OJO 258 bp overlap
ChIP SK-N-SH ENCFF635KBN 143 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 211 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 304 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 139 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 59 bp overlap
RNF2 9 datasets
ChIP H1 ENCFF239FFS 72 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 254 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 153 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 103 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 70 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 236 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 178 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 198 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 78 bp overlap
SAP30 3 datasets
ChIP H1 ENCFF149IOE 390 bp overlap
ChIP H1 ENCFF149IOE 331 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 197 bp overlap
SMAD2-3 5 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 209 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 262 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 680 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 324 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 291 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 424 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 680 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 524 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 465 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 507 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 146 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 353 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 567 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 437 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 251 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 128 bp overlap
SUZ12 7 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 157 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 187 bp overlap
ChIP H1 ENCFF881NFR 531 bp overlap
ChIP H1 ENCFF881NFR 179 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 127 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 185 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 156 bp overlap
TBP 5 datasets
ChIP hESC GSE122298.TBP.hESC 167 bp overlap
ChIP hESC GSE122298.TBP.hESC 87 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 206 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 51 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 154 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 115 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCFF560VPN 76 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 345 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 355 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 290 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 158 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 160 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 411 bp overlap
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