chr5 : 130,479,304 130,479,914
610 bp 66 TFs 0 linked genes
This 610 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:130,474,304 – 130,484,914
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 168 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 179 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BRD4 2 datasets
ChIP HCC1937 GSE124748.BRD4.HCC1937 543 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
CDX2 3 datasets
ChIP LS180 GSE31939.CDX2.LS180 149 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 92 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 406 bp overlap
CTCF 55 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 151 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 118 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 227 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 186 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 149 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 115 bp overlap
ChIP GM23338 ENCFF531QOI 192 bp overlap
ChIP GM23338 ENCFF832KWE 514 bp overlap
ChIP GM23338 ENCFF832KWE 312 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 230 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 196 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 530 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 190 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 231 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 252 bp overlap
ChIP HCT116 ENCFF003KHP 421 bp overlap
ChIP HCT116 ENCFF209YMI 285 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 280 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 213 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 304 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 210 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 296 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 170 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 115 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 141 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 166 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 283 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 116 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 190 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 156 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 281 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 265 bp overlap
ChIP chondrocyte ENCFF134ORZ 545 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 124 bp overlap
ChIP endodermal cell ENCFF471YCZ 189 bp overlap
ChIP endothelial cell ENCFF663LIE 537 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 183 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 183 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 610 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 170 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 453 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 236 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 264 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 178 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 234 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 148 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 491 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 214 bp overlap
ChIP BLaER1 ENCFF460KDD 244 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DBP 1 dataset
Motif DE_12h DE_12h-DBP_MA0639.2 10 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
Dmbx1 1 dataset
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ESR1 2 datasets
ChIP T-47D_CR3flp GSE99479.ESR1.T-47D_CR3flp 329 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 286 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 261 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 198 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 488 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 3 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 365 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 297 bp overlap
GATA3 3 datasets
ChIP MCF-7 ENCFF352QVM 481 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 221 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 169 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 339 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 270 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 588 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUND 2 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 174 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 169 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 170 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 83 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 63 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 226 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 91 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 263 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PITX1 2 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PPARG 2 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 219 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 280 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 216 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 180 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 85 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMAD3 2 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 132 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 91 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 145 bp overlap
SPI1 1 dataset
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 92 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT1 1 dataset
ChIP NCI-H358 GSE79707.STAT1.NCI-H358 83 bp overlap
STAT3 9 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 142 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 271 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 400 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 343 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 236 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 392 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 356 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 396 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 442 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 323 bp overlap
ZNF143 4 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 392 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 322 bp overlap
ZNF410 1 dataset
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF76 2 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap