chr5 : 108,115,460 108,116,007
547 bp 65 TFs 0 linked genes
This 547 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:108,110,460 – 108,121,007
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 19 datasets
ChIP LNCaP GSE110655.AR.LNCaP 321 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 273 bp overlap
ChIP LNCaP_1F5 GSE30623.AR.LNCaP_1F5 124 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 189 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 224 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 278 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 240 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 231 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 176 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 194 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 269 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 194 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 182 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 201 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 296 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 282 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 196 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 214 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 77 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BRD4 3 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 547 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 547 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 547 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 349 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 201 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 264 bp overlap
FOXA1 18 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 324 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 146 bp overlap
ChIP LNCaP-C4-2B GSE40050.FOXA1.LNCaP-C4-2B 250 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 164 bp overlap
ChIP LNCaP-C4-2B_DHT GSE40050.FOXA1.LNCaP-C4-2B_DHT 245 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 170 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 175 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.FOXA1.LNCaP_1F5_SIFOXA1 170 bp overlap
ChIP LNCaP_DMSO GSE114274.FOXA1.LNCaP_DMSO 248 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 168 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 324 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 208 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 143 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 139 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 152 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 242 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 219 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 182 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 340 bp overlap
ChIP DE DE-FOXA2-2 406 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 290 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 290 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 272 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 279 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 167 bp overlap
GATA3 8 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 186 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 290 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 260 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 196 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 229 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 171 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 230 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 249 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 340 bp overlap
ChIP DE DE-GATA4-2 455 bp overlap
ChIP foregut GSE117136.GATA4.foregut 358 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 326 bp overlap
ChIP DE DE-GATA6-2 404 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 424 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 470 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 484 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 547 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 374 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 258 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 268 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 419 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 349 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 161 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 292 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 134 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 415 bp overlap
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 153 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 349 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 152 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 547 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 394 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 464 bp overlap
ChIP hESC GSE20650.NANOG.hESC 167 bp overlap
ChIP hESC GSE18292.NANOG.hESC 260 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 236 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 165 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 335 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 326 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 268 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 400 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 6 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 195 bp overlap
ChIP HCT-116_C16 GSE127960.TCF7L2.HCT-116_C16 272 bp overlap
ChIP HCT-116_C18 GSE127960.TCF7L2.HCT-116_C18 219 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 213 bp overlap
ChIP MCF-7 ENCSR000EWT.TCF7L2.MCF-7 301 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 209 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF667 2 datasets
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap