chr5 : 107,459,523 – 107,460,163

640 bp 75 TFs 0 linked genes

This 640 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

75 transcription factors

Ascl2 1 dataset

Motif DE_36h DE_36h-Ascl2_MA0816.1 10 bp overlap

BRD4 1 dataset

ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 194 bp overlap

CDK6 1 dataset

ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap

Dmrt1 1 dataset

Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap

ELF3 2 datasets

ChIP PDAC GSE64557.ELF3.PDAC 327 bp overlap

ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 531 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 263 bp overlap

ERG 1 dataset

ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 147 bp overlap

ESR1 14 datasets

ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 224 bp overlap

ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 126 bp overlap

ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 97 bp overlap

ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 295 bp overlap

ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 307 bp overlap

ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 407 bp overlap

ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 212 bp overlap

ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 342 bp overlap

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 377 bp overlap

ChIP MCF-7_E2-320min-ERalpha GSE94023.ESR1.MCF-7_E2-320min-ERalpha 140 bp overlap

ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 167 bp overlap

ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 152 bp overlap

ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 286 bp overlap

ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 182 bp overlap

ESR1_Y537N 2 datasets

ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 332 bp overlap

ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 395 bp overlap

ESR2 2 datasets

ChIP MCF-7_C412_E2 GSE48096.ESR2.MCF-7_C412_E2 129 bp overlap

ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 257 bp overlap

FIGLA 1 dataset

Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 326 bp overlap

ChIP DE DE-GATA4-2 396 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 397 bp overlap

ChIP DE DE-GATA6-2 420 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 285 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 377 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 326 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 410 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 564 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 353 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 402 bp overlap

GLIS1 1 dataset

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 271 bp overlap

HIC1 2 datasets

ChIP HEK293 ENCFF252CFL 441 bp overlap

ChIP HEK293 ENCSR803GYT.HIC1.HEK293 396 bp overlap

JUN 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 272 bp overlap

MYB 1 dataset

Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap

NFIA 1 dataset

Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap

NFIX 1 dataset

Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap

NFYA 1 dataset

Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap

NFYC 1 dataset

Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap

NKX2-3 1 dataset

Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 1 dataset

Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 221 bp overlap

ONECUT2 1 dataset

ChIP A-549 GSE102599.ONECUT2.A-549 190 bp overlap

OSR2 1 dataset

ChIP HEK293 ENCSR324LTM.OSR2.HEK293 358 bp overlap

PBX1 1 dataset

Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 203 bp overlap

Ptf1A 1 dataset

Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap

RELA 1 dataset

ChIP BJAB GSE117250.RELA.BJAB 214 bp overlap

RFX4 1 dataset

Motif DE_36h DE_36h-RFX4_MA0799.3 13 bp overlap

SCRT1 3 datasets

Motif DE_36h DE_36h-SCRT1_MA0743.3 10 bp overlap

ChIP HEK293 ENCFF513YVP 122 bp overlap

ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 390 bp overlap

SCRT2 2 datasets

Motif DE_36h DE_36h-SCRT2_MA0744.3 10 bp overlap

ChIP HEK293 ENCFF711QQB 500 bp overlap

SETDB1 2 datasets

ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 398 bp overlap

ChIP U2OS ENCSR000EYD.SETDB1.U2OS 407 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 316 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 297 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 311 bp overlap

SMARCA2 1 dataset

ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 264 bp overlap

SMARCA4 2 datasets

ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 270 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 380 bp overlap

SNAI2 1 dataset

Motif DE_36h DE_36h-SNAI2_MA0745.3 8 bp overlap

SOX10 1 dataset

Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap

SP1 1 dataset

ChIP GM12878 ENCSR000BHK.SP1.GM12878 119 bp overlap

SPIB 1 dataset

Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap

Smad4 1 dataset

Motif DE_36h DE_36h-Smad4_MA1153.2 7 bp overlap

Spi1 1 dataset

Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap

TRIM28 5 datasets

ChIP AF22 GSE84259.TRIM28.AF22 357 bp overlap

ChIP HEK293 ENCFF582MWI 640 bp overlap

ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 372 bp overlap

ChIP U2OS ENCSR000EYC.TRIM28.U2OS 236 bp overlap

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 274 bp overlap

Vdr 1 dataset

Motif DE_36h DE_36h-Vdr_MA0693.4 7 bp overlap

ZEB1 1 dataset

Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap

ZFP37 1 dataset

ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 431 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 528 bp overlap

ZIC4 1 dataset

Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap

ZKSCAN5 1 dataset

Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF143 1 dataset

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap

ZNF18 3 datasets

ChIP HEK293 ENCFF066NGR 441 bp overlap

ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 367 bp overlap

ChIP HEK293 GSE76494.ZNF18.HEK293 199 bp overlap

ZNF189 1 dataset

ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 623 bp overlap

ZNF317 1 dataset

Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap

ZNF324 1 dataset

ChIP HEK293 GSE76494.ZNF324.HEK293 211 bp overlap

ZNF335 1 dataset

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 205 bp overlap

ZNF341 1 dataset

ChIP HEK293 GSE76494.ZNF341.HEK293 138 bp overlap

ZNF362 1 dataset

ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 178 bp overlap

ZNF366 2 datasets

ChIP HEK293 ENCFF799ATK 201 bp overlap

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 493 bp overlap

ZNF394 1 dataset

ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 421 bp overlap

ZNF490 1 dataset

ChIP HEK293 GSE76494.ZNF490.HEK293 334 bp overlap

ZNF501 1 dataset

ChIP HEK293 ENCSR461ZJT.ZNF501.HEK293 524 bp overlap

ZNF518A 1 dataset

ChIP HEK293 ENCSR159GFL.ZNF518A.HEK293 245 bp overlap

ZNF554 1 dataset

ChIP HEK293 GSE76494.ZNF554.HEK293 270 bp overlap

ZNF600 1 dataset

ChIP HEK293 ENCFF785JSX 365 bp overlap

ZNF692 1 dataset

ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 221 bp overlap

ZNF843 1 dataset

ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 384 bp overlap

ZNF93 1 dataset

Motif DE_36h DE_36h-ZNF93_MA1721.2 14 bp overlap

ZSCAN30 1 dataset

ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 435 bp overlap

ZSCAN5C 1 dataset

ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 243 bp overlap

Zic1::Zic2 1 dataset

Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap