chr5 : 40,390,300 – 40,391,153

853 bp 81 TFs 0 linked genes

This 853 bp open chromatin element has no linked target genes and is bound by 81 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

81 transcription factors

AR 1 dataset

ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 263 bp overlap

ASXL3 2 datasets

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 135 bp overlap

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 133 bp overlap

Arid3a 1 dataset

Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap

BAP1 1 dataset

ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 94 bp overlap

BCL11B 1 dataset

ChIP PBMC_T-reg GSE120872.BCL11B.PBMC_T-reg 153 bp overlap

BRD4 2 datasets

ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 523 bp overlap

ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 96 bp overlap

CDK9 2 datasets

ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 239 bp overlap

ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 228 bp overlap

CREB1 1 dataset

ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 246 bp overlap

CTCF 3 datasets

ChIP DND-41 ENCFF913MRA 162 bp overlap

ChIP DND41 ENCSR000AQU.CTCF.DND41 119 bp overlap

ChIP heart left ventricle ENCFF842XRG 210 bp overlap

Crx 1 dataset

Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap

DUX4 3 datasets

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

ChIP HEK293 GSE75791.DUX4.HEK293 292 bp overlap

ChIP WA01 GSE94322.DUX4.WA01 275 bp overlap

DUXA 1 dataset

Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap

Dux 1 dataset

Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap

ELF4 1 dataset

Motif DE_36h DE_36h-ELF4_MA0641.1 12 bp overlap

ERF::FIGLA 1 dataset

Motif DE_36h DE_36h-ERFFIGLA_MA1934.2 13 bp overlap

ERF::FOXO1 1 dataset

Motif DE_36h DE_36h-ERFFOXO1_MA1936.2 12 bp overlap

ESR1 2 datasets

ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 183 bp overlap

ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 308 bp overlap

ETS1 1 dataset

ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 243 bp overlap

ETV1 1 dataset

Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap

ETV2::FIGLA 1 dataset

Motif DE_36h DE_36h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::DRGX 1 dataset

Motif DE_36h DE_36h-ETV5DRGX_MA1944.2 12 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_36h DE_36h-ETV5FIGLA_MA1945.2 14 bp overlap

EZH2 1 dataset

ChIP Loucy ENCFF586BXS 277 bp overlap

EZH2_phosphoT487 1 dataset

ChIP Loucy ENCSR783QUL.EZH2_phosphoT487.Loucy 212 bp overlap

FLI1 1 dataset

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 293 bp overlap

FLI1::DRGX 1 dataset

Motif DE_36h DE_36h-FLI1DRGX_MA1949.2 14 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_36h DE_36h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA1 2 datasets

ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 254 bp overlap

ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 194 bp overlap

FOXA2 2 datasets

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap

ChIP DE DE-FOXA2-1 276 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_36h DE_36h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap

GATA2 5 datasets

ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 241 bp overlap

ChIP LNCaP GSE38391.GATA2.LNCaP 202 bp overlap

ChIP LNCaP GSE52725.GATA2.LNCaP 202 bp overlap

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 389 bp overlap

ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 140 bp overlap

GATA3 9 datasets

ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 277 bp overlap

ChIP Jurkat GSE120063.GATA3.Jurkat 252 bp overlap

ChIP Jurkat GSE29180.GATA3.Jurkat 281 bp overlap

ChIP Jurkat GSE76181.GATA3.Jurkat 368 bp overlap

ChIP Jurkat GSE68976.GATA3.Jurkat 314 bp overlap

ChIP Kelly GSE94822.GATA3.Kelly 190 bp overlap

ChIP MCF-7 GSE51274.GATA3.MCF-7 182 bp overlap

ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 141 bp overlap

ChIP T-47D ENCSR000BMX.GATA3.T-47D 251 bp overlap

GATA3_Nter 1 dataset

ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 227 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 332 bp overlap

ChIP DE DE-GATA4-2 395 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 243 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 454 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 369 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 527 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 501 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 488 bp overlap

ChIP OACP4-C GSE132680.GATA6.OACP4-C 381 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 270 bp overlap

GSC 1 dataset

Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap

HOXB13 1 dataset

ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 82 bp overlap

HOXB2::ELK1 1 dataset

Motif DE_36h DE_36h-HOXB2ELK1_MA1957.1 14 bp overlap

HOXB8 1 dataset

ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 374 bp overlap

IKZF2 1 dataset

Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap

Lef1 1 dataset

Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap

MED1 1 dataset

ChIP LNCaP_Veh GSE125245.MED1.LNCaP_Veh 128 bp overlap

MYB 4 datasets

Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap

ChIP DU528 GSE94000.MYB.DU528 310 bp overlap

ChIP Jurkat GSE59657.MYB.Jurkat 305 bp overlap

ChIP Loucy GSE94000.MYB.Loucy 491 bp overlap

NFYA 1 dataset

Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap

NFYC 1 dataset

Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap

NKX3-1 1 dataset

ChIP islet ERP004003.NKX3-1.islet 346 bp overlap

NR3C1 1 dataset

ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 157 bp overlap

OTX1 1 dataset

Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap

PDX1 1 dataset

ChIP islet ERP001456.PDX1.islet 230 bp overlap

PGR 1 dataset

ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 263 bp overlap

PHOX2A 1 dataset

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap

PITX1 1 dataset

Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap

PROP1 1 dataset

Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap

RHOXF1 1 dataset

Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap

RUNX1 2 datasets

ChIP Jurkat GSE68976.RUNX1.Jurkat 250 bp overlap

ChIP Jurkat GSE76181.RUNX1.Jurkat 179 bp overlap

RUNX2 3 datasets

ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 329 bp overlap

ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 401 bp overlap

ChIP PER-117 GSE151819.RUNX2.PER-117 272 bp overlap

SCRT2 1 dataset

Motif DE_36h DE_36h-SCRT2_MA0744.3 10 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 328 bp overlap

SMAD3 2 datasets

ChIP HCC1954 GSE104760.SMAD3.HCC1954 366 bp overlap

ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 338 bp overlap

SMARCA4 2 datasets

ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 232 bp overlap

ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 253 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 273 bp overlap

SPIC 1 dataset

Motif DE_36h DE_36h-SPIC_MA0687.2 13 bp overlap

STAT3 2 datasets

ChIP BT-474 GSE152203.STAT3.BT-474 213 bp overlap

ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 287 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 296 bp overlap

TAL1 1 dataset

ChIP MOLT-3 GSE59657.TAL1.MOLT-3 231 bp overlap

TBX2 1 dataset

ChIP Kelly GSE94822.TBX2.Kelly 168 bp overlap

TBX21 2 datasets

ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 298 bp overlap

ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 321 bp overlap

TCF3 1 dataset

ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 302 bp overlap

TCF7L2 1 dataset

ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 279 bp overlap

TFAP4::ETV1 1 dataset

Motif DE_36h DE_36h-TFAP4ETV1_MA1966.2 13 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap

TLE3 1 dataset

ChIP LAPC-4_TFS GSE123618.TLE3.LAPC-4_TFS 299 bp overlap

ZMIZ1 1 dataset

ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 252 bp overlap