chr5 : 16,427,501 – 16,428,635
1,134 bp 40 TFs 1 linked gene
This 1.1 kb open chromatin element is linked to ENSG00000249737 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000249737 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:16,422,501 – 16,433,635
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 292 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 150 bp overlap
BRD4 5 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 205 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 275 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 348 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 413 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 132 bp overlap
CTCF 110 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 242 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 228 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 141 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 103 bp overlap
ChIP A549 ENCFF034FVO 225 bp overlap
ChIP BE2C ENCFF757SRF 219 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 154 bp overlap
ChIP C4-2B ENCFF821XVN 404 bp overlap
ChIP C4-2B ENCFF821XVN 203 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 142 bp overlap
ChIP GM23338 ENCFF531QOI 254 bp overlap
ChIP GM23338 ENCFF832KWE 363 bp overlap
ChIP GM23338 ENCFF832KWE 164 bp overlap
ChIP H1 ENCFF764RHO 222 bp overlap
ChIP H9 ENCFF152GTF 192 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 160 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 194 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 197 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 84 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 182 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 131 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 79 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 109 bp overlap
ChIP HFF ENCSR000DUM.CTCF.HFF 159 bp overlap
ChIP HFFc6 ENCFF005CJI 332 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 155 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 177 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 127 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 127 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 158 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 148 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 302 bp overlap
ChIP HeLa-S3 ENCFF626XQK 173 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 225 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 100 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 193 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 210 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 143 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 133 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 148 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 228 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 102 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 72 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 128 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 110 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 129 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 276 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 186 bp overlap
ChIP MCF-7 ENCFF139NQI 203 bp overlap
ChIP MCF-7 ENCFF198DQX 187 bp overlap
ChIP MCF-7 ENCFF494VXA 157 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 193 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 159 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 176 bp overlap
ChIP PC-3 ENCFF487TUI 260 bp overlap
ChIP PC-3 ENCFF487TUI 56 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 252 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 139 bp overlap
ChIP SK-N-SH ENCFF575DMG 280 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 175 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 95 bp overlap
ChIP SiHa GSE143026.CTCF.SiHa 153 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 103 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 219 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 109 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 136 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 138 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 161 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 162 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 116 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 165 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 199 bp overlap
ChIP endodermal cell ENCFF471YCZ 192 bp overlap
ChIP endothelial cell ENCFF663LIE 295 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 117 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 90 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 386 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 182 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 141 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 184 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 121 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 138 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 91 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 122 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 502 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 158 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 118 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 207 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 194 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 207 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 128 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 199 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 185 bp overlap
ChIP keratinocyte ENCFF667ULX 168 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 144 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 449 bp overlap
ChIP myotube ENCFF981UHL 214 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 156 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 273 bp overlap
ChIP neural cell ENCFF335ADI 372 bp overlap
ChIP neural progenitor cell ENCFF420RBO 277 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 228 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 178 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 192 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 258 bp overlap
ChIP prostate ENCSR946MNG.CTCF.prostate 70 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 149 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 203 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 282 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 245 bp overlap
ESR1 2 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 122 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 281 bp overlap
EZH2 2 datasets
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 200 bp overlap
ChIP T98G GSE112240.EZH2.T98G 396 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 265 bp overlap
GATA6 1 dataset
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 109 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 184 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 307 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 405 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 463 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 331 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 132 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP H1 ENCFF914VQY 238 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 289 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 209 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 181 bp overlap
NFYB 1 dataset
ChIP K-562 ENCSR000EGQ.NFYB.K-562 153 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 129 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 174 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 285 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 167 bp overlap
ChIP neural cell ENCFF564MOT 489 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 268 bp overlap
ChIP neural cell ENCFF882LXX 419 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 278 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 304 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 209 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 284 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 299 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 385 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 402 bp overlap
SMARCA4 1 dataset
ChIP NSC GSE125033.SMARCA4.NSC 236 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 300 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 57 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 448 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 318 bp overlap
T 2 datasets
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 236 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 266 bp overlap
TAL1 1 dataset
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 86 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 339 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 150 bp overlap
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