chr4 : 174,559,970 – 174,560,441

471 bp 84 TFs 0 linked genes

This 471 bp open chromatin element has no linked target genes and is bound by 84 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

84 transcription factors

AR 1 dataset

ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 168 bp overlap

ASH2L 2 datasets

ChIP VCaP GSE60841.ASH2L.VCaP 222 bp overlap

ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 181 bp overlap

BAF155 2 datasets

ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 293 bp overlap

ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 193 bp overlap

BRD4 5 datasets

ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 251 bp overlap

ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 112 bp overlap

ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 276 bp overlap

ChIP hESC GSE33281.BRD4.hESC 92 bp overlap

ChIP keratinocyte GSE140992.BRD4.keratinocyte 471 bp overlap

CEBPA 1 dataset

ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 159 bp overlap

CREB5 1 dataset

ChIP LNCaP GSE137775.CREB5.LNCaP 178 bp overlap

CREBBP 2 datasets

ChIP keratinocyte GSE140991.CREBBP.keratinocyte 315 bp overlap

ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 266 bp overlap

CTCF 11 datasets

ChIP endodermal cell ENCFF471YCZ 338 bp overlap

ChIP epithelial cell of esophagus ENCFF946GGT 268 bp overlap

ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 166 bp overlap

ChIP esophagus squamous epithelium ENCFF037IYT 342 bp overlap

ChIP esophagus squamous epithelium ENCFF700BXI 376 bp overlap

ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 237 bp overlap

ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 300 bp overlap

ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 145 bp overlap

ChIP placenta ENCFF029PHY 368 bp overlap

ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 149 bp overlap

ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 148 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF460KDD 328 bp overlap

DMRTA2 1 dataset

Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap

DMRTC2 1 dataset

Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap

Dux 1 dataset

Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap

EBF1 1 dataset

Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap

EBF3 1 dataset

Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

Ebf2 1 dataset

Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap

Ebf4 1 dataset

Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA1 1 dataset

ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 111 bp overlap

FOXH1 1 dataset

Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap

GATA1::TAL1 1 dataset

Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap

GRHL2 5 datasets

ChIP HBE GSE46194.GRHL2.HBE 252 bp overlap

ChIP MCF-7 GSE109820.GRHL2.MCF-7 252 bp overlap

ChIP MCF-7 GSE99680.GRHL2.MCF-7 161 bp overlap

ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 250 bp overlap

ChIP T-47D GSE99680.GRHL2.T-47D 254 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

HOXB13 1 dataset

ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 61 bp overlap

HOXB4 1 dataset

Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap

Hoxd13 1 dataset

Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

IRF4 1 dataset

Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap

KDM1A 1 dataset

ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 188 bp overlap

KLF13 1 dataset

Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap

KLF4 1 dataset

ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 226 bp overlap

LIN54 1 dataset

Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap

MAF 1 dataset

ChIP keratinocyte_epidermal_PROLIF GSE52953.MAF.keratinocyte_epidermal_PROLIF 126 bp overlap

MAZ 1 dataset

Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 471 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 283 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 317 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 311 bp overlap

NFYA 1 dataset

Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap

NFYB 1 dataset

Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap

NFYC 1 dataset

Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap

NKX6-3 1 dataset

Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap

NR1H4::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H4RXRA_MA1146.2 13 bp overlap

NR3C1 1 dataset

ChIP HCC1937 GSE152203.NR3C1.HCC1937 215 bp overlap

NR4A2::RXRA 1 dataset

Motif DE_12h DE_12h-NR4A2RXRA_MA1147.2 13 bp overlap

NR6A1 1 dataset

Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap

Nanog 1 dataset

Motif DE_12h DE_12h-Nanog_MA2339.1 7 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

PGR 2 datasets

ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 223 bp overlap

ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 235 bp overlap

POLR2A 1 dataset

ChIP vagina ENCFF305NWS 285 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 1 dataset

ChIP hiPSC GSE56567.POU5F1.hiPSC 298 bp overlap

PROX1 1 dataset

Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap

Prdm15 1 dataset

Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap

Prdm4 1 dataset

Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap

RAD21 1 dataset

ChIP H1 ENCFF698EWO 234 bp overlap

RARA 1 dataset

ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 212 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 162 bp overlap

RCOR1 1 dataset

ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 256 bp overlap

SMARCA4 1 dataset

ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 176 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 131 bp overlap

SMC1A 2 datasets

ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 167 bp overlap

ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 272 bp overlap

STAT3 1 dataset

ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 185 bp overlap

Stat2 1 dataset

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

Stat5a 1 dataset

Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap

TEAD1 1 dataset

Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap

TEAD3 1 dataset

Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap

TEAD4 3 datasets

ChIP H1 ENCFF778PAX 245 bp overlap

ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 208 bp overlap

ChIP SNU-216 GSE44416.TEAD4.SNU-216 218 bp overlap

TP63 2 datasets

ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 206 bp overlap

ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 170 bp overlap

YY1AP1 1 dataset

ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 240 bp overlap

Yy1 1 dataset

Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap

ZNF418 2 datasets

Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 200 bp overlap

ZNF582 1 dataset

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

ZNF684 1 dataset

Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap

ZNF750 1 dataset

ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 219 bp overlap

ZNF766 2 datasets

Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap