chr4 : 174,204,100 – 174,204,651
551 bp 58 TFs 1 linked gene
This 551 bp open chromatin element is linked to ENSG00000289179 and is bound by 58 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000289179 9.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:174,199,100 – 174,209,651
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 184 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 457 bp overlap
BCL11A 2 datasets
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BRD4 1 dataset
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 551 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 551 bp overlap
CTCF 2 datasets
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 144 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 203 bp overlap
EGR1 1 dataset
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 243 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 264 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 551 bp overlap
ESR1 1 dataset
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 165 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 190 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 207 bp overlap
EZH2 4 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 434 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 238 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 405 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 281 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 163 bp overlap
GATA2 6 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 78 bp overlap
ChIP SH-SY5Y ENCFF485YIB 166 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 551 bp overlap
ChIP SK-N-SH ENCFF764OZD 259 bp overlap
ChIP SK-N-SH ENCFF764OZD 50 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 505 bp overlap
GATA3 14 datasets
ChIP BE2C GSE65664.GATA3.BE2C 249 bp overlap
ChIP BE2C GSE65664.GATA3.BE2C 223 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 255 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 203 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 107 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 96 bp overlap
ChIP NGP GSE65664.GATA3.NGP 165 bp overlap
ChIP SH-SY5Y ENCFF475HYF 125 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 551 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 232 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 98 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 551 bp overlap
ChIP SK-N-SH ENCFF040SSB 167 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 118 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 135 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 437 bp overlap
ChIP DE DE-GATA4-2 551 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 281 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 396 bp overlap
ChIP DE DE-GATA6-2 360 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 301 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 449 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 385 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 490 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 281 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 544 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 255 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 526 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 247 bp overlap
ChIP K562 ENCFF348IBL 323 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 74 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 482 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 279 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 272 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 280 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 190 bp overlap
MITF 2 datasets
ChIP 501-mel GSE137522.MITF.501-mel 70 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 51 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 288 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 465 bp overlap
MYCN 11 datasets
ChIP BE2C GSE80151.MYCN.BE2C 251 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 258 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 97 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 439 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 197 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 434 bp overlap
ChIP MYCN-3_low GSE83317.MYCN.MYCN-3_low 166 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 240 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 180 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 157 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 242 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 418 bp overlap
ChIP hESC GSE18292.NANOG.hESC 128 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 357 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 59 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 283 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 312 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 259 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 551 bp overlap
PSIP1 2 datasets
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 262 bp overlap
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 63 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 120 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 551 bp overlap
REST 2 datasets
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 287 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 374 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 336 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 545 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 505 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 163 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 426 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 403 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 252 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 551 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 256 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 213 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 311 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 319 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 175 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 460 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCFF754TJT 401 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 399 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
Motif ES_0h ES_0h-THRB_MA1575.2 17 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 345 bp overlap
TWIST1 4 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 367 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 224 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 224 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 367 bp overlap
Tbx6 3 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 123 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 252 bp overlap
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