chr4 : 139,624,334 139,624,862
528 bp 53 TFs 0 linked genes
This 528 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,619,334 – 139,629,862
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
BCL11A 1 dataset
ChIP H1 ENCFF836SSR 177 bp overlap
BCOR 5 datasets
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 142 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 483 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 429 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 190 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 412 bp overlap
BRD4 1 dataset
ChIP NMC24335 GSE96775.BRD4.NMC24335 159 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 217 bp overlap
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 203 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 237 bp overlap
CTNNB1 3 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 507 bp overlap
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 406 bp overlap
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 349 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EZH2 1 dataset
ChIP WA01 ENCSR000ASY.EZH2.WA01 71 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 528 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 528 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 528 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 528 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 528 bp overlap
HNF4A 1 dataset
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 79 bp overlap
HOXB13 1 dataset
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 164 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 198 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 528 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 270 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 528 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 448 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 359 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 376 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 528 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 230 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT916 GSE128230.MED12.leiomyoma_PT916 81 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 148 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 528 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 311 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 173 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 528 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 528 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 528 bp overlap
ChIP hESC GSE20650.NANOG.hESC 245 bp overlap
ChIP hESC GSE18292.NANOG.hESC 315 bp overlap
NIPBL 4 datasets
ChIP WA09 GSE105028.NIPBL.WA09 368 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 444 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 427 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 428 bp overlap
NR2F2 1 dataset
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 185 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 231 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 520 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 297 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 488 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 244 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 303 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 135 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 465 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 321 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 160 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 423 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 215 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 230 bp overlap
RNF2 3 datasets
ChIP WA01 GSE104690.RNF2.WA01 289 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 528 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 333 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 328 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 276 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 528 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 528 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 528 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 528 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 528 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 229 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 215 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 388 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 373 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 296 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 195 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 528 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 370 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 266 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 230 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 365 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 216 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 327 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 143 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 152 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 405 bp overlap
ChIP WTC11 ENCFF502QUV 223 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 263 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 2 datasets
ChIP H9 GSE142050.TP53.H9 528 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 371 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 171 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 277 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap