chr4 : 121,077,640 121,077,953
313 bp 87 TFs 2 linked genes
This 313 bp open chromatin element is linked to NDNF and NDNF-AS1 and is bound by 87 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NDNF 5.6 kb Proximal Proximity
NDNF-AS1 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:121,072,640 – 121,082,953
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 7 datasets
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 165 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 114 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 86 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 264 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 101 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 173 bp overlap
ChIP breast_tumor_Male_20 GSE104399.AR.breast_tumor_Male_20 203 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 288 bp overlap
ChIP BLaER1 ENCFF346MCV 251 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 313 bp overlap
ESR1 1 dataset
ChIP ZR751 ERP000783.ESR1.ZR751 298 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOS 4 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 203 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 83 bp overlap
ChIP MCF-7 ENCFF282FWZ 204 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 152 bp overlap
FOXA1 58 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 221 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 118 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 313 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 119 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 313 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 147 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 153 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 114 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 66 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 114 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 235 bp overlap
ChIP 22Rv1_TFS_Crispr GSE123618.FOXA1.22Rv1_TFS_Crispr 142 bp overlap
ChIP 22Rv1_TFS_Crispr-36 GSE123618.FOXA1.22Rv1_TFS_Crispr-36 122 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 117 bp overlap
ChIP 22Rv1_ab GSE129951.FOXA1.22Rv1_ab 228 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 157 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 181 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 274 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 230 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 159 bp overlap
ChIP LAPC-4_CST_V5 GSE123618.FOXA1.LAPC-4_CST_V5 98 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 79 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 87 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 125 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 61 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 116 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 177 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 162 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 144 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 112 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 184 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 145 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 313 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 313 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 288 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 313 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 106 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 142 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 244 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 179 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 173 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 135 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 90 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 72 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 122 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 193 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 295 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 257 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 313 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 313 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 313 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 313 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 276 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 185 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 226 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 53 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 71 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 208 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 217 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 288 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 278 bp overlap
ChIP DE DE-FOXA2-1 183 bp overlap
ChIP DE DE-FOXA2-2 155 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 223 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 235 bp overlap
ChIP DE DE-GATA6-2 265 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 313 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 7 datasets
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 53 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 60 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 60 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 50 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 138 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 62 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 120 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 234 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 175 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 223 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 86 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 258 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 218 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 313 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 249 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
NR3C1 2 datasets
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 203 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 216 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 313 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
POLR2A 2 datasets
ChIP upper lobe of left lung ENCFF640VPA 127 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 313 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 132 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 143 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
RARB 1 dataset
Motif DE_12h DE_12h-RARB_MA1552.2 13 bp overlap
RARG 1 dataset
Motif DE_12h DE_12h-RARG_MA1553.2 13 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
SIX4 2 datasets
ChIP MCF-7 ENCFF919BLX 143 bp overlap
ChIP MCF-7 ENCSR279IEM.SIX4.MCF-7 123 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 166 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 66 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 176 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 142 bp overlap
SPI1 4 datasets
ChIP monocyte GSE31621.SPI1.monocyte 115 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 94 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 131 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 89 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
STAT3 7 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 108 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 146 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 219 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 85 bp overlap
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 309 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 185 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 260 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 246 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 199 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF425 1 dataset
ChIP HEK293T GSE78099.ZNF425.HEK293T 194 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap