chr4 : 90,007,504 90,008,140
636 bp 72 TFs 0 linked genes
This 636 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:90,002,504 – 90,013,140
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 291 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 196 bp overlap
CDX2 1 dataset
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
CTCF 1 dataset
ChIP neural progenitor cell ENCFF420RBO 255 bp overlap
Cebpa 6 datasets
ChIP BLaER1 ENCFF031ISE 106 bp overlap
ChIP BLaER1 ENCFF093OYK 155 bp overlap
ChIP BLaER1 ENCFF262VBH 325 bp overlap
ChIP BLaER1 ENCFF274GAT 107 bp overlap
ChIP BLaER1 ENCFF364PUR 173 bp overlap
ChIP BLaER1 ENCFF460KDD 109 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 306 bp overlap
ChIP DE DE-GATA4-2 437 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 427 bp overlap
ChIP DE DE-GATA6-2 399 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 473 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 3 datasets
Motif DE_24h DE_24h-JUN_MA0488.2 10 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 353 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap
JUND 1 dataset
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MYC 1 dataset
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 322 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 392 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 463 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 291 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 222 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 326 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 3 datasets
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
Motif DE_24h DE_24h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 417 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 255 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 226 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 134 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 373 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif DE_24h DE_24h-ZNF143_MA0088.2 16 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif DE_24h DE_24h-ZNF582_MA1983.2 19 bp overlap
ZNF667 2 datasets
Motif DE_48h DE_48h-ZNF667_MA1984.2 11 bp overlap
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF76 2 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif DE_24h DE_24h-ZNF76_MA1716.2 17 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap