chr4 : 87,921,767 87,922,408
641 bp 58 TFs 3 linked genes
This 641 bp open chromatin element is linked to SPP1, PKD2, and ABCG2 and is bound by 58 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SPP1 53.7 kb Distal Multiome
PKD2 85.6 kb Distal Multiome
ABCG2 237.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:87,916,767 – 87,927,408
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 332 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
Atoh1 2 datasets
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
Motif DE_24h DE_24h-Atoh1_MA1467.3 7 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 195 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 243 bp overlap
ELK1::HOXA1 2 datasets
Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap
Motif DE_24h DE_24h-ELK1HOXA1_MA1931.1 14 bp overlap
ELK1::HOXB13 2 datasets
Motif DE_12h DE_12h-ELK1HOXB13_MA1932.2 15 bp overlap
Motif DE_24h DE_24h-ELK1HOXB13_MA1932.2 15 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP GM23338 ENCFF701IZH 304 bp overlap
ETV5::HOXA2 2 datasets
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_24h DE_24h-ETV5HOXA2_MA1948.2 12 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 359 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 176 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 237 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 335 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 65 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 145 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 245 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HIC2 1 dataset
Motif DE_24h DE_24h-HIC2_MA0738.2 6 bp overlap
HMBOX1 2 datasets
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_24h DE_24h-HMBOX1_MA0895.2 7 bp overlap
HOXB2::ELK1 2 datasets
Motif DE_12h DE_12h-HOXB2ELK1_MA1957.1 14 bp overlap
Motif DE_24h DE_24h-HOXB2ELK1_MA1957.1 14 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 321 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 367 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 333 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 328 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 349 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 262 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 257 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 58 bp overlap
KLF6 2 datasets
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 396 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 168 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 94 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 251 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 181 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 201 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 196 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 192 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 137 bp overlap
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_24h DE_24h-NEUROG2_MA1642.2 7 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_24h DE_24h-Nr1h3Rxra_MA0494.2 16 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 360 bp overlap
ChIP GM23338 ENCFF450WCS 276 bp overlap
ChIP H1 ENCFF566JSR 259 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 321 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 247 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 122 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 147 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 333 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 84 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 120 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 262 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 351 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 321 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 351 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 272 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 302 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 137 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 285 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 153 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 488 bp overlap
SP8 2 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SPIB 1 dataset
Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP H1 ENCFF478SZO 348 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 53 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 67 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 65 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 210 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 298 bp overlap
THAP1 1 dataset
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
TP53 2 datasets
ChIP H9 GSE142050.TP53.H9 91 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 78 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 166 bp overlap
TWIST1 2 datasets
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif DE_24h DE_24h-TWIST1_MA1123.3 8 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 125 bp overlap
ZBTB7B 1 dataset
Motif ES_0h ES_0h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif ES_0h ES_0h-ZBTB7C_MA0695.2 8 bp overlap
ZNF232 2 datasets
ChIP WTC11 ENCFF901BGD 201 bp overlap
ChIP WTC11 ENCFF901BGD 404 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 157 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 152 bp overlap