chr4 : 63,198,897 – 63,199,277

380 bp 79 TFs 0 linked genes

This 380 bp open chromatin element has no linked target genes and is bound by 79 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

79 transcription factors

BHLHE22 2 datasets

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

Motif DE_24h DE_24h-BHLHE22_MA1635.2 6 bp overlap

Crx 2 datasets

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap

EOMES 2 datasets

Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap

Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap

ESRRA 1 dataset

Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap

Esrrg 1 dataset

Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap

FEZF2 1 dataset

Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap

FIGLA 2 datasets

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap

GSC 2 datasets

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap

HMGA1 1 dataset

ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 87 bp overlap

Hmga1 1 dataset

Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap

Hmx3 1 dataset

Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap

ISL2 1 dataset

Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap

MAFF 1 dataset

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

MEF2B 1 dataset

Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap

MGA 2 datasets

Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap

Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap

MXI1 1 dataset

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

MYOG 2 datasets

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

Motif DE_24h DE_24h-MYOG_MA0500.3 8 bp overlap

NFIB 1 dataset

Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap

NR2C1 1 dataset

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

NR2F1 1 dataset

Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap

NR2F2 1 dataset

Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap

NR4A2 1 dataset

Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap

Neurod2 2 datasets

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap

Nkx3-2 1 dataset

Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap

Nr1H2 1 dataset

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

Nr2F6 1 dataset

Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap

Nr5A2 1 dataset

Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap

OTX1 2 datasets

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap

Motif DE_24h DE_24h-OTX2_MA0712.3 7 bp overlap

Olig2 2 datasets

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap

PITX1 2 datasets

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap

PITX3 2 datasets

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap

PKNOX2 2 datasets

Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap

Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap

POU2F3 1 dataset

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU4F1 1 dataset

Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap

POU4F3 1 dataset

Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap

POU5F1 1 dataset

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

Ppara 1 dataset

Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap

Ptf1A 2 datasets

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

Motif DE_24h DE_24h-Ptf1A_MA1620.2 8 bp overlap

RHOXF1 2 datasets

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap

Rarg 2 datasets

Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap

Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap

SCRT1 1 dataset

Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap

SCRT2 1 dataset

Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 380 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 330 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 313 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 355 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 343 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 370 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 319 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 275 bp overlap

SNAI2 2 datasets

Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap

Motif DE_24h DE_24h-SNAI2_MA0745.3 8 bp overlap

SNAI3 2 datasets

Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap

Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap

TBR1 2 datasets

Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap

Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap

TBX1 2 datasets

Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap

Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap

TBX15 2 datasets

Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap

Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap

TBX18 2 datasets

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap

TBX2 2 datasets

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap

TBX21 2 datasets

Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap

Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap

TBX3 2 datasets

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap

TBX4 2 datasets

Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap

Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap

TBX5 2 datasets

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap

TGIF1 2 datasets

Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap

Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap

TGIF2 2 datasets

Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap

Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap

THRA 1 dataset

Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap

Tbx6 2 datasets

Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap

Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap

Tcf12 2 datasets

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap

Twist2 2 datasets

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap

Yy1 1 dataset

Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap

ZBTB18 3 datasets

Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap

Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap

ZEB1 2 datasets

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap

ZNF135 3 datasets

Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap

Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap

ZNF213 1 dataset

Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap

ZNF324 1 dataset

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

ZNF354A 1 dataset

Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap

Zfp809 2 datasets

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap