chr4 : 41,747,180 – 41,747,918
738 bp 47 TFs 2 linked genes
This 738 bp open chromatin element is linked to PHOX2B and PHOX2B-AS1 and is bound by 47 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PHOX2B at TSS At TSS Proximity
PHOX2B-AS1 373 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:41,742,180 – 41,752,918
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 154 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 537 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 327 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 636 bp overlap
BRD4 4 datasets
ChIP CLB-Ga GSE133453.BRD4.CLB-Ga 215 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 381 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 547 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 182 bp overlap
CBX2 1 dataset
ChIP HepG2 ENCFF838BNI 165 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 577 bp overlap
CHD1 3 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 120 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 252 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 220 bp overlap
CTBP2 4 datasets
ChIP H1 ENCFF329MAX 476 bp overlap
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 230 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 324 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF031ISE 126 bp overlap
ChIP BLaER1 ENCFF274GAT 316 bp overlap
ChIP BLaER1 ENCFF335XTP 432 bp overlap
ChIP BLaER1 ENCFF364PUR 549 bp overlap
ChIP BLaER1 ENCFF460KDD 452 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 157 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 134 bp overlap
EZH2 26 datasets
ChIP A673 ENCFF790MVL 738 bp overlap
ChIP A673 ENCFF955JRZ 738 bp overlap
ChIP GM23248 ENCFF404ZHM 187 bp overlap
ChIP GM23248 ENCFF404ZHM 94 bp overlap
ChIP GM23338 ENCFF613YON 738 bp overlap
ChIP GM23338 ENCFF886DXX 704 bp overlap
ChIP H1 ENCFF232NZA 738 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 738 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 738 bp overlap
ChIP SK-N-MC ENCFF434OHW 557 bp overlap
ChIP SK-N-MC ENCFF674XUJ 557 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 114 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 499 bp overlap
ChIP astrocyte ENCFF365JTP 714 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 738 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 60 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 533 bp overlap
ChIP hESC GSE113817.EZH2.hESC 552 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 247 bp overlap
ChIP hepatocyte ENCFF118DKH 90 bp overlap
ChIP hepatocyte ENCFF552DZB 738 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 167 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 717 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 738 bp overlap
ChIP neural progenitor cell ENCFF472NFV 738 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 175 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 198 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 230 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 463 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 308 bp overlap
ChIP DE DE-GATA6-2 465 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 88 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 229 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 559 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 210 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 626 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 381 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 216 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 195 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 195 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 129 bp overlap
MED26 1 dataset
ChIP U2OS_SHEP400 GSE73742.MED26.U2OS_SHEP400 313 bp overlap
MYC 2 datasets
ChIP BE2C_SHCTR GSE70098.MYC.BE2C_SHCTR 567 bp overlap
ChIP BE2C_SHWDR5 GSE70098.MYC.BE2C_SHWDR5 244 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 581 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 114 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 172 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 422 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 82 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 169 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 152 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 385 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 738 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 337 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 568 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 182 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 506 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 738 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 184 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 237 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 84 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 219 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 118 bp overlap
SMARCA4 1 dataset
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 227 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 420 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 149 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 256 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 134 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 93 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 303 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 174 bp overlap
SUZ12 10 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 255 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 290 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 738 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 185 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 249 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 653 bp overlap
ChIP hMSC GSE125166.SUZ12.hMSC 254 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.SUZ12.hiPSC_WTb_RNase-neg 301 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 118 bp overlap
TCF12 3 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 246 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 131 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 233 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 494 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 221 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 548 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 502 bp overlap
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