chr4 : 25,032,268 25,033,116
848 bp 57 TFs 1 linked gene
This 848 bp open chromatin element is linked to LGI2 and is bound by 57 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LGI2 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:25,027,268 – 25,038,116
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 245 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 90 bp overlap
CEBPB 2 datasets
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 239 bp overlap
CTCF 116 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 158 bp overlap
ChIP ASC GSE21366.CTCF.ASC 146 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 141 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 119 bp overlap
ChIP H54 ENCFF255TVO 187 bp overlap
ChIP H9 ENCFF152GTF 284 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 226 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 182 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 175 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 166 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 170 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 101 bp overlap
ChIP HFFc6 ENCFF005CJI 281 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 128 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 169 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 117 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 197 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 227 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 116 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 184 bp overlap
ChIP MCF-7 ENCFF198DQX 156 bp overlap
ChIP MCF-7 ENCFF210JUZ 316 bp overlap
ChIP MCF-7 ENCFF494VXA 156 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 264 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 162 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 136 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 124 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 100 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 214 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 144 bp overlap
ChIP Panc1 ENCFF056JQX 459 bp overlap
ChIP SK-N-SH ENCFF575DMG 309 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 265 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 96 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 274 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 275 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 182 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 165 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 96 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 170 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 103 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 161 bp overlap
ChIP astrocyte ENCFF042YJV 221 bp overlap
ChIP astrocyte ENCFF042YJV 345 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 177 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 76 bp overlap
ChIP body of pancreas ENCFF438KTE 292 bp overlap
ChIP brain ENCFF163BBN 332 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 235 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 134 bp overlap
ChIP colon_sigmoid ENCSR721AHD.CTCF.colon_sigmoid 215 bp overlap
ChIP coronary-artery ENCSR175FLL.CTCF.coronary-artery 189 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 131 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 148 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 125 bp overlap
ChIP endodermal cell ENCFF471YCZ 168 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 128 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 107 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 155 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 111 bp overlap
ChIP esophagus muscularis mucosa ENCFF045JBW 300 bp overlap
ChIP esophagus muscularis mucosa ENCFF421MEH 279 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 147 bp overlap
ChIP esophagus muscularis mucosa ENCFF544GAS 294 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 248 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR443WKD.CTCF.esophagus-muscularis-mucosa 218 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 227 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR353DFU.CTCF.esophagus_muscularis-mucosa 164 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR074SFL.CTCF.esophagus_muscularis-mucosa 138 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 190 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 166 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 134 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 113 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 172 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 108 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 146 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 126 bp overlap
ChIP gastroesophageal sphincter ENCFF125ESZ 276 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 295 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 301 bp overlap
ChIP gastroesophageal sphincter ENCFF582GAX 246 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 281 bp overlap
ChIP gastroesophageal sphincter ENCFF918KPI 231 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 268 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 208 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 231 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 226 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 201 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 241 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 180 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 234 bp overlap
ChIP heart left ventricle ENCFF548XHH 302 bp overlap
ChIP heart right ventricle ENCFF435TKW 272 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 135 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 227 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 284 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 235 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 156 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 124 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 377 bp overlap
ChIP neural crest cell ENCFF182LWK 228 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 162 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 214 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 174 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 143 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 189 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 178 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 82 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 195 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 188 bp overlap
ChIP tibial-artery ENCSR079YAP.CTCF.tibial-artery 197 bp overlap
ChIP tibial-nerve ENCSR875NEW.CTCF.tibial-nerve 131 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 286 bp overlap
ChIP upper lobe of left lung ENCFF277NLT 271 bp overlap
ChIP uterus ENCSR527TPP.CTCF.uterus 122 bp overlap
ChIP uterus ENCSR684PGO.CTCF.uterus 197 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 409 bp overlap
ChIP BLaER1 ENCFF346MCV 279 bp overlap
ChIP BLaER1 ENCFF364PUR 331 bp overlap
ChIP BLaER1 ENCFF798NMV 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 269 bp overlap
ESR1 2 datasets
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 236 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 257 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
EZH2 5 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 360 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 643 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 62 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 268 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 59 bp overlap
FOS 1 dataset
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 57 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 481 bp overlap
ChIP DE DE-FOXA2-2 575 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 5 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 188 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 152 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 152 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 161 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 242 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 291 bp overlap
ChIP DE DE-GATA4-2 424 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 436 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 301 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 581 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 423 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 592 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 760 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 345 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 302 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 390 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 506 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 204 bp overlap
KDM1A 2 datasets
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 237 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 255 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 187 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MED12 2 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 56 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 59 bp overlap
MTF2 2 datasets
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 340 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 94 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 174 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 149 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 161 bp overlap
PGR 2 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 198 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 348 bp overlap
POLR2A 1 dataset
ChIP esophagus muscularis mucosa ENCFF791ZXN 335 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 441 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 307 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 180 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 117 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 114 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 243 bp overlap
RELA 3 datasets
ChIP 786-O GSE86092.RELA.786-O 318 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 135 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 179 bp overlap
RUNX1 1 dataset
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 275 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 730 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 840 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 672 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 716 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 782 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 649 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 359 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 538 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 81 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 811 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 555 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 110 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 85 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 256 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TP63 4 datasets
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 236 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 288 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 206 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 249 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 154 bp overlap
ZMYM3 1 dataset
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 204 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 226 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 211 bp overlap
ChIP HepG2 ENCFF490FFQ 312 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 223 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 180 bp overlap