chr4 : 6,367,437 6,367,936
499 bp 38 TFs 7 linked genes
This 499 bp open chromatin element is linked to 7 target genes and is bound by 38 transcription factors.
Linked Genes
7 genes
Gene Expression Dist. to TSS Distance Link type
WFS1 97.8 kb Distal Multiome
ENSG00000251408 165.4 kb Distal Multiome
ENSG00000290803 166.9 kb Distal Multiome
JAKMIP1 167.1 kb Distal Multiome
C4orf50 167.1 kb Distal Multiome
MAN2B2 207.5 kb Distal Multiome
MRFAP1 273.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:6,362,437 – 6,372,936
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 362 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 354 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 389 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 184 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 175 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 456 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 205 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 383 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 499 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 426 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 230 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 389 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 331 bp overlap
ChIP neural cell ENCFF442QNK 454 bp overlap
EZH2 10 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 499 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 269 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 72 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 314 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 162 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 279 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 161 bp overlap
ChIP T98G GSE112240.EZH2.T98G 222 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 434 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 246 bp overlap
GATA3 1 dataset
ChIP BE2C GSE65664.GATA3.BE2C 168 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 442 bp overlap
ChIP DE DE-GATA4-2 499 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 362 bp overlap
ChIP DE DE-GATA6-2 473 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 499 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 298 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 476 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 409 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 309 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 377 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 252 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 282 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 353 bp overlap
MAX 3 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 250 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 456 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 353 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 261 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 357 bp overlap
NANOG 6 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 272 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 152 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 245 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 303 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 250 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 184 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 350 bp overlap
REST 2 datasets
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 100 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 184 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 313 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 275 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 243 bp overlap
ChIP H1 ENCFF896IJG 294 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 395 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 156 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 218 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 214 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 499 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 439 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 450 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 161 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 223 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 379 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 250 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 231 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 72 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 143 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 333 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 243 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 120 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 125 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 455 bp overlap