chr4 : 4,048,067 4,048,621
554 bp 77 TFs 6 linked genes
This 554 bp open chromatin element is linked to 6 target genes and is bound by 77 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000290888 59.3 kb Distal Multiome
FAM86EP 92.9 kb Distal Multiome
TMEM128 199.9 kb Distal Multiome
LYAR 241.8 kb Distal Multiome
ZBTB49 241.9 kb Distal Multiome
ADRA2C 282.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:4,043,067 – 4,053,621
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 68 bp overlap
Arid3a 1 dataset
Motif DE_24h DE_24h-Arid3a_MA0151.1 6 bp overlap
Bcl11B 1 dataset
Motif DE_24h DE_24h-Bcl11B_MA1989.2 9 bp overlap
CDX2 1 dataset
Motif DE_24h DE_24h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_24h DE_24h-CDX4_MA1473.2 9 bp overlap
CTCF 2 datasets
ChIP GM23338 ENCFF531QOI 210 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 172 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 194 bp overlap
E2F2 1 dataset
Motif DE_24h DE_24h-E2F2_MA0864.3 13 bp overlap
E2F4 1 dataset
Motif DE_24h DE_24h-E2F4_MA0470.3 13 bp overlap
EZH2 1 dataset
ChIP keratinocyte ENCFF070STK 158 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 269 bp overlap
FOXD2 1 dataset
Motif DE_24h DE_24h-FOXD2_MA0847.4 11 bp overlap
FOXN3 1 dataset
Motif DE_24h DE_24h-FOXN3_MA1489.1 8 bp overlap
Foxj3 1 dataset
Motif DE_24h DE_24h-Foxj3_MA0851.2 9 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 482 bp overlap
ChIP DE DE-GATA4-2 554 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 502 bp overlap
ChIP DE DE-GATA6-2 554 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 530 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 554 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 554 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 554 bp overlap
GRHL2 1 dataset
Motif DE_24h DE_24h-GRHL2_MA1105.3 8 bp overlap
HOXA10 1 dataset
Motif DE_24h DE_24h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_24h DE_24h-HOXB13_MA0901.3 9 bp overlap
HOXB4 1 dataset
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
HOXD9 1 dataset
Motif DE_24h DE_24h-HOXD9_MA0913.3 9 bp overlap
Hmga1 1 dataset
Motif DE_24h DE_24h-Hmga1_MA2124.1 8 bp overlap
Hoxa13 1 dataset
Motif DE_24h DE_24h-Hoxa13_MA0650.4 8 bp overlap
Irf1 1 dataset
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 312 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 497 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 542 bp overlap
MEIS1 2 datasets
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
NFIA 1 dataset
Motif DE_24h DE_24h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_24h DE_24h-NFIX_MA0671.2 6 bp overlap
NR6A1 1 dataset
Motif DE_24h DE_24h-NR6A1_MA1541.2 14 bp overlap
PATZ1 1 dataset
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PHOX2A 1 dataset
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
PKNOX1 1 dataset
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
POU1F1 1 dataset
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 419 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 280 bp overlap
POU6F2 1 dataset
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
RREB1 1 dataset
Motif DE_24h DE_24h-RREB1_MA0073.2 19 bp overlap
Runx1 2 datasets
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
SATB1 1 dataset
Motif DE_24h DE_24h-SATB1_MA1963.2 7 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 521 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 517 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 554 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 554 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 554 bp overlap
SOX13 1 dataset
Motif DE_24h DE_24h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 325 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 428 bp overlap
SOX2 1 dataset
Motif DE_24h DE_24h-SOX2_MA0143.5 7 bp overlap
SOX21 2 datasets
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
SP1 1 dataset
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_24h DE_24h-SPIC_MA0687.2 13 bp overlap
Sox1 1 dataset
Motif DE_24h DE_24h-Sox1_MA0870.1 15 bp overlap
Sox17 1 dataset
Motif DE_24h DE_24h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_24h DE_24h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_24h DE_24h-Sox5_MA0087.3 8 bp overlap
Sox7 1 dataset
Motif DE_24h DE_24h-Sox7_MA2095.1 10 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TGIF1 1 dataset
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_24h DE_24h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_24h DE_24h-TGIF2LY_MA1572.1 12 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 160 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 114 bp overlap
ChIP WTC11 ENCFF699QGS 272 bp overlap
USF2 2 datasets
ChIP WTC11 ENCFF139JAW 271 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
ZNF547 1 dataset
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap