chr4 : 785,978 786,564
586 bp 53 TFs 1 linked gene
This 586 bp open chromatin element is linked to PCGF3-AS1 and is bound by 53 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PCGF3-AS1 4.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:780,978 – 791,564
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AGO1 3 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 79 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 77 bp overlap
ChIP HepG2 ENCFF358CXO 249 bp overlap
AR 2 datasets
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 239 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 82 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 586 bp overlap
BCL11A 1 dataset
ChIP MDA-MB-157 ERP003925.BCL11A.MDA-MB-157 390 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 586 bp overlap
BRD4 10 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 135 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 94 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 204 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 316 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 492 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 169 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 255 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 586 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 222 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 586 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 245 bp overlap
CTCFL 1 dataset
ChIP delta-47 GSE70764.CTCFL.delta-47 202 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 481 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 235 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 300 bp overlap
ERG 4 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 248 bp overlap
ChIP K-562 GSE23730.ERG.K-562 229 bp overlap
ChIP K-562 GSE23730.ERG.K-562 161 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 190 bp overlap
ESR1 5 datasets
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 257 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 384 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 258 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 114 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 252 bp overlap
EZH2 33 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 361 bp overlap
ChIP B cell ENCFF803EMO 172 bp overlap
ChIP GM23248 ENCFF404ZHM 87 bp overlap
ChIP GM23248 ENCFF404ZHM 292 bp overlap
ChIP GM23338 ENCFF886DXX 68 bp overlap
ChIP GM23338 ENCFF886DXX 354 bp overlap
ChIP H1 ENCFF232NZA 586 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 277 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 117 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 124 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 277 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 437 bp overlap
ChIP astrocyte ENCFF365JTP 586 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 121 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 411 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 411 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 165 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 586 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 386 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 138 bp overlap
ChIP hESC GSE113817.EZH2.hESC 437 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 413 bp overlap
ChIP hepatocyte ENCFF552DZB 353 bp overlap
ChIP myotube ENCFF857GWB 134 bp overlap
ChIP myotube ENCFF857GWB 471 bp overlap
ChIP myotube ENCFF857GWB 266 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 74 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 339 bp overlap
ChIP neural cell ENCFF610EPB 119 bp overlap
ChIP neural progenitor cell ENCFF018MKA 586 bp overlap
ChIP neural progenitor cell ENCFF472NFV 586 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 266 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 267 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 586 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 139 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE128445.GATA3.MCF-7 188 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 521 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 103 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 586 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 122 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 586 bp overlap
JUN 1 dataset
ChIP MCF-7_BD610326 GSE128445.JUN.MCF-7_BD610326 325 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 417 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 196 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 149 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 245 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 252 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 505 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 258 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 247 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 276 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 119 bp overlap
NANOG 3 datasets
ChIP WA01 ERP004238.NANOG.WA01 337 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 101 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 345 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 372 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 586 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 162 bp overlap
PCBP1 1 dataset
ChIP K-562 GSE120104.PCBP1.K-562 92 bp overlap
PLAG1 2 datasets
ChIP K-562 GSE111469.PLAG1.K-562 203 bp overlap
ChIP K-562 GSE111469.PLAG1.K-562 214 bp overlap
POU5F1 4 datasets
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 132 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 586 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 401 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 586 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 586 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 298 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 145 bp overlap
RNF2 4 datasets
ChIP WA01 GSE104690.RNF2.WA01 516 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 318 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 268 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 53 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 332 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 91 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 294 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 147 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 225 bp overlap
SREBP2 1 dataset
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 586 bp overlap
SUZ12 4 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 434 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 271 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 107 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 586 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 230 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 295 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 583 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 171 bp overlap
ZBTB33 5 datasets
ChIP HepG2 ENCFF778UKV 214 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 168 bp overlap
ChIP K562 ENCFF427SDV 307 bp overlap
ChIP K562 ENCFF875HLX 154 bp overlap
ChIP K562 ENCFF911VPU 204 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 244 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 209 bp overlap