chr3 : 170,179,808 – 170,180,014
206 bp 54 TFs 1 linked gene
This 206 bp open chromatin element is linked to PHC3 and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PHC3 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:170,174,808 – 170,185,014
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 206 bp overlap
ChIP K562 ENCFF938UXQ 206 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 116 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 206 bp overlap
BRD4 3 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 120 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 206 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 170 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 206 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 102 bp overlap
CEBPB 1 dataset
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 153 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 139 bp overlap
CTCF 1 dataset
ChIP HL-60 ERP008568.CTCF.HL-60 206 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 140 bp overlap
ESR1 1 dataset
ChIP T-47D ENCSR000BJS.ESR1.T-47D 111 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 206 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 125 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 206 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 120 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 206 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 206 bp overlap
ChIP DE DE-FOXA2-2 206 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 138 bp overlap
FOXM1 1 dataset
ChIP K562 ENCFF490XGT 206 bp overlap
FOXP1 1 dataset
ChIP LNCaP GSE62492.FOXP1.LNCaP 140 bp overlap
GATA1 6 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 172 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 177 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 206 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 154 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 156 bp overlap
ChIP K562 ENCFF094CMK 201 bp overlap
GATA2 2 datasets
ChIP K562 ENCFF544PCK 206 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 198 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 206 bp overlap
ChIP DE DE-GATA4-2 206 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 206 bp overlap
ChIP foregut GSE117136.GATA4.foregut 206 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 206 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 206 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 180 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 181 bp overlap
ChIP DE DE-GATA6-1 206 bp overlap
ChIP DE DE-GATA6-2 206 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 206 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 206 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 206 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 206 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 206 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 206 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 171 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 206 bp overlap
ChIP foregut GSE117136.GATA6.foregut 206 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 180 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 206 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 206 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 206 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 206 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 84 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 83 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 206 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 164 bp overlap
ChIP K562 ENCFF320EQC 206 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 206 bp overlap
MEN1 2 datasets
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 78 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 206 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR675LRO.MLLT1.K-562 155 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 51 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 166 bp overlap
POLR2A 1 dataset
ChIP K562 ENCFF836GHX 57 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 175 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 206 bp overlap
RNF2 2 datasets
ChIP K562 ENCFF653BQJ 206 bp overlap
ChIP K562 ENCFF653BQJ 52 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 190 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 141 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 206 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 70 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 112 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 59 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 206 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 116 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 147 bp overlap
SP1 1 dataset
ChIP K562 ENCFF088XXV 196 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_7aa GSE139053.SS18-SSX.fibroblast_7aa 152 bp overlap
STAT5A 1 dataset
ChIP K-562 ENCSR000BRR.STAT5A.K-562 151 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 206 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 119 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 203 bp overlap
TAL1 3 datasets
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 149 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 168 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 206 bp overlap
TRIM28 1 dataset
ChIP K-562 ENCSR000BRW.TRIM28.K-562 152 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 134 bp overlap
YY1 2 datasets
ChIP ALL GSE145549.YY1.ALL 206 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 104 bp overlap
ZBTB40 1 dataset
ChIP GM12878 ENCSR189YYK.ZBTB40.GM12878 84 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 206 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 206 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 155 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 52 bp overlap
ZNF592 1 dataset
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 132 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 206 bp overlap
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