chr3 : 153,903,540 153,903,911
371 bp 68 TFs 0 linked genes
This 371 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:153,898,540 – 153,908,911
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 128 bp overlap
BCL6 2 datasets
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 158 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BRD4 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD4.MV4-11_IBET151_500nM 226 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 106 bp overlap
CTCF 174 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 122 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 225 bp overlap
ChIP A673 ENCFF123WOM 279 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 131 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 144 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 207 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 236 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 240 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 182 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 205 bp overlap
ChIP GM12864 ENCFF357DQE 234 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 195 bp overlap
ChIP GM12865 ENCFF067GFI 245 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 104 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 167 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 199 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 184 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 151 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 140 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 158 bp overlap
ChIP GM12872 ENCFF697BYI 234 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 191 bp overlap
ChIP GM12873 ENCFF711LOS 210 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 171 bp overlap
ChIP GM12874 ENCFF942MTD 218 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 192 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 102 bp overlap
ChIP GM12878 ENCFF217EAX 232 bp overlap
ChIP GM12878 ENCFF511URZ 167 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 100 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 119 bp overlap
ChIP GM13977 ENCFF528ESQ 147 bp overlap
ChIP GM23338 ENCFF531QOI 192 bp overlap
ChIP GM23338 ENCFF772DML 180 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 155 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 205 bp overlap
ChIP H1 ENCFF764RHO 180 bp overlap
ChIP H9 ENCFF152GTF 236 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 203 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 202 bp overlap
ChIP HAP1_SCC4KO GSE94992.CTCF.HAP1_SCC4KO 145 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 228 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 135 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 128 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 170 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 176 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 183 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 194 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 147 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 276 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 210 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 178 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 200 bp overlap
ChIP HCT116 ENCFF003KHP 174 bp overlap
ChIP HCT116 ENCFF209YMI 213 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 118 bp overlap
ChIP HEC-1-B_F-mutation GSE140868.CTCF.HEC-1-B_F-mutation 71 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 172 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 123 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 159 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 241 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 104 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 215 bp overlap
ChIP HEK293 ENCFF498RMM 219 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 164 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 156 bp overlap
ChIP HMS001 GSE143026.CTCF.HMS001 126 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 245 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 107 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 157 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 128 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 116 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 183 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 166 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 166 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 147 bp overlap
ChIP HepG2 ENCFF127KUP 196 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 195 bp overlap
ChIP Jurkat_GSI3d GSE130140.CTCF.Jurkat_GSI3d 134 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 144 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 99 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 140 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 124 bp overlap
ChIP K562 ENCFF430KTH 256 bp overlap
ChIP K562 ENCFF598YSU 208 bp overlap
ChIP Loucy ENCFF359TVQ 172 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 230 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 232 bp overlap
ChIP MCF-7 ENCFF139NQI 211 bp overlap
ChIP MCF-7 ENCFF198DQX 162 bp overlap
ChIP MCF-7 ENCFF210JUZ 262 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 162 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 167 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 183 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 157 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 126 bp overlap
ChIP MM.1S ENCFF869JMQ 285 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 243 bp overlap
ChIP OCI-LY1 ENCFF455ESK 250 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 207 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 165 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 151 bp overlap
ChIP PC-3 ENCFF487TUI 314 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 200 bp overlap
ChIP PC-9 ENCFF539ULB 317 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 133 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 155 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 225 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 172 bp overlap
ChIP T-cell GSE115893.CTCF.T-cell 197 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 204 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 160 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 195 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 197 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 157 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 185 bp overlap
ChIP VU-SCC-147 GSE143026.CTCF.VU-SCC-147 144 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 156 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 180 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 185 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 226 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 131 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 162 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 223 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 163 bp overlap
ChIP endodermal cell ENCFF471YCZ 219 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 176 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 239 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 371 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 371 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 236 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 113 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 127 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 180 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 263 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 185 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 201 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 211 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 109 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 140 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 356 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 371 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 207 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 171 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 162 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 180 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 190 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 108 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 186 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 208 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 208 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 221 bp overlap
ChIP islet ERP004003.CTCF.islet 154 bp overlap
ChIP keratinocyte ENCFF046PBT 176 bp overlap
ChIP keratinocyte ENCFF291YDC 176 bp overlap
ChIP keratinocyte ENCFF667ULX 255 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 180 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 205 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 113 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 173 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 286 bp overlap
ChIP neural crest cell ENCFF182LWK 295 bp overlap
ChIP neural progenitor cell ENCFF420RBO 104 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 210 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 170 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 168 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 158 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 198 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 265 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 326 bp overlap
CUX1 1 dataset
Motif DE_12h DE_12h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif DE_12h DE_12h-CUX2_MA0755.2 9 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
ESR1 1 dataset
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
FERD3L 1 dataset
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 233 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 201 bp overlap
ChIP H1 ENCFF967OJF 213 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT5A 1 dataset
ChIP MV4-11 GSE64862.STAT5A.MV4-11 105 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap