chr3 : 129,181,904 – 129,182,096
192 bp 62 TFs 2 linked genes
This 192 bp open chromatin element is linked to CNBP and ENSG00000289469 and is bound by 62 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CNBP 1.8 kb Proximal Proximity
ENSG00000289469 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:129,176,904 – 129,187,096
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 38 datasets
ChIP LNCaP ERP001226.AR.LNCaP 164 bp overlap
ChIP LNCaP GSE94682.AR.LNCaP 192 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 192 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 131 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 171 bp overlap
ChIP LNCaP_DHT GSE83860.AR.LNCaP_DHT 143 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.AR.LNCaP_DHT_TNFA 160 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 162 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 151 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 109 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 164 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 190 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 139 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 162 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 188 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 192 bp overlap
ChIP VCaP GSE148358.AR.VCaP 192 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 179 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 192 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 192 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 192 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 192 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 192 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 75 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 190 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 167 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 120 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 176 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 158 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 192 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 192 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 190 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.AR.prostate-cancer_PDX_70 96 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 152 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 108 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 115 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 112 bp overlap
ChIP prostate_P7_T GSE130408.AR.prostate_P7_T 176 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 192 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 50 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 169 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 113 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 192 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 192 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_5000nM GSE120715.BRD3.MV4-11_IBET151_5000nM 134 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 144 bp overlap
CHD1 4 datasets
ChIP K-562 ENCSR000AQD.CHD1.K-562 183 bp overlap
ChIP LNCaP GSE64528.CHD1.LNCaP 63 bp overlap
ChIP LNCaP_DHT GSE64528.CHD1.LNCaP_DHT 192 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 192 bp overlap
DACH1 2 datasets
ChIP K-562 ENCSR030TJP.DACH1.K-562 150 bp overlap
ChIP K562 ENCFF574LOW 192 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 52 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 192 bp overlap
ChIP K562 ENCFF622HMZ 192 bp overlap
ERG 1 dataset
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 179 bp overlap
ESR1_pS118 2 datasets
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 192 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1_pS118.MCF-7_Veh_sc 192 bp overlap
ETS1 1 dataset
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 141 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 95 bp overlap
FOXA1 7 datasets
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 141 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 91 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 132 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 192 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 192 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 192 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 192 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 192 bp overlap
ChIP DE DE-FOXA2-1 192 bp overlap
ChIP DE DE-FOXA2-2 192 bp overlap
GATA1 13 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 137 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 110 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 79 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 192 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 109 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 192 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 161 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 192 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 141 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 162 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 166 bp overlap
ChIP erythroid_Don002 GSE137982.GATA1.erythroid_Don002 162 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 176 bp overlap
GATA2 9 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 148 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 59 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 157 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 157 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 192 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 184 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 176 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 192 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 192 bp overlap
GATA4 9 datasets
ChIP DE DE-GATA4-1 192 bp overlap
ChIP DE DE-GATA4-2 192 bp overlap
ChIP G296S GSE85628.GATA4.G296S 184 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 184 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 192 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 58 bp overlap
ChIP foregut GSE117136.GATA4.foregut 192 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 192 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 192 bp overlap
GATA6 18 datasets
ChIP AGS GSE51705.GATA6.AGS 166 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 95 bp overlap
ChIP DE DE-GATA6-1 192 bp overlap
ChIP DE DE-GATA6-2 192 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 192 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 192 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 192 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 192 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 192 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 192 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 192 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 167 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 192 bp overlap
ChIP foregut GSE117136.GATA6.foregut 192 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 192 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 192 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 192 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 192 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 192 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 192 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 109 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 192 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 123 bp overlap
HOXB13 15 datasets
ChIP G-401 GSE65381.HOXB13.G-401 192 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 161 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 192 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 96 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 133 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 101 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 164 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 179 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 157 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 153 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 173 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 178 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 192 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 178 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 192 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 192 bp overlap
KMT2A 5 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 106 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 120 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 99 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 127 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 192 bp overlap
MAX 1 dataset
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 78 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 75 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 140 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 151 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 192 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 119 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 192 bp overlap
NFATC3 1 dataset
ChIP K-562 ENCSR670FDA.NFATC3.K-562 192 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 81 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 70 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 192 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 192 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 192 bp overlap
POLR2A 2 datasets
ChIP SK-N-MC ENCFF088IVG 76 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 65 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 192 bp overlap
RCOR1 1 dataset
ChIP HeLa GSE45441.RCOR1.HeLa 164 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 155 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 192 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 182 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 192 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 134 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 192 bp overlap
ChIP K562 ENCFF506JCB 179 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 106 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 159 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 152 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 171 bp overlap
SMARCC1 2 datasets
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 157 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 192 bp overlap
SMARCC2 1 dataset
ChIP K-562 ENCSR519WMW.SMARCC2.K-562 192 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 133 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 52 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 192 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 78 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 101 bp overlap
TLE3 1 dataset
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 192 bp overlap
TOP1 1 dataset
ChIP LNCaP GSE63202.TOP1.LNCaP 159 bp overlap
TRPS1 2 datasets
ChIP MCF-7 GSE133072.TRPS1.MCF-7 192 bp overlap
ChIP T-47D GSE107013.TRPS1.T-47D 103 bp overlap
VEZF1 3 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 192 bp overlap
ChIP K562 ENCFF053XDV 187 bp overlap
ChIP K562 ENCFF053XDV 184 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 192 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 104 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 192 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 89 bp overlap
ZNF148 2 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 192 bp overlap
ChIP K562 ENCFF352SDL 192 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 163 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 114 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 86 bp overlap
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