chr3 : 120,677,217 120,678,016
799 bp 75 TFs 5 linked genes
This 799 bp open chromatin element is linked to 5 target genes and is bound by 75 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
RABL3 65.1 kb Distal Multiome
GTF2E1 65.3 kb Distal Multiome
NDUFB4 81.1 kb Distal Multiome
FSTL1 226.4 kb Distal Multiome
STXBP5L 230.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:120,672,217 – 120,683,016
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
BCL11A 2 datasets
Motif DE_24h DE_24h-BCL11A_MA2324.1 7 bp overlap
Motif DE_36h DE_36h-BCL11A_MA2324.1 7 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 265 bp overlap
E2F6 2 datasets
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
Motif DE_36h DE_36h-E2F6_MA0471.3 8 bp overlap
E2F7 2 datasets
Motif DE_24h DE_24h-E2F7_MA0758.1 14 bp overlap
Motif DE_36h DE_36h-E2F7_MA0758.1 14 bp overlap
E2F8 2 datasets
Motif DE_24h DE_24h-E2F8_MA0865.3 9 bp overlap
Motif DE_36h DE_36h-E2F8_MA0865.3 9 bp overlap
ETV2 2 datasets
Motif DE_24h DE_24h-ETV2_MA0762.2 9 bp overlap
Motif DE_36h DE_36h-ETV2_MA0762.2 9 bp overlap
FEZF2 2 datasets
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 337 bp overlap
ChIP DE DE-FOXA2-2 504 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
Motif DE_24h DE_24h-FOXA2_MA0047.4 8 bp overlap
Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap
FOXK1 3 datasets
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
Motif DE_24h DE_24h-FOXK1_MA0852.3 7 bp overlap
Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap
FOXK2 3 datasets
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
Motif DE_24h DE_24h-FOXK2_MA1103.3 7 bp overlap
Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap
FOXL1 3 datasets
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
Motif DE_24h DE_24h-FOXL1_MA0033.2 7 bp overlap
Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap
FOXO4 3 datasets
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
Motif DE_24h DE_24h-FOXO4_MA0848.1 7 bp overlap
Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap
FOXO6 3 datasets
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
Motif DE_24h DE_24h-FOXO6_MA0849.1 7 bp overlap
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
FOXP2 3 datasets
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
Motif DE_24h DE_24h-FOXP2_MA0593.2 9 bp overlap
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
FOXP3 3 datasets
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
Motif DE_24h DE_24h-FOXP3_MA0850.1 7 bp overlap
Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap
FOXS1 3 datasets
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Motif DE_24h DE_24h-FOXS1_MA2118.1 8 bp overlap
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
Foxf1 3 datasets
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Motif DE_24h DE_24h-Foxf1_MA1606.2 7 bp overlap
Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap
Foxo1 3 datasets
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Motif DE_24h DE_24h-Foxo1_MA0480.3 7 bp overlap
Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap
Foxo3 3 datasets
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
Motif DE_24h DE_24h-Foxo3_MA0157.4 7 bp overlap
Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap
Foxq1 3 datasets
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
Motif DE_24h DE_24h-Foxq1_MA0040.2 10 bp overlap
Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 544 bp overlap
ChIP DE DE-GATA4-2 712 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA5 2 datasets
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 457 bp overlap
ChIP DE DE-GATA6-2 527 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 603 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 679 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 613 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 510 bp overlap
Gata3 2 datasets
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 621 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 51 bp overlap
Hoxa13 2 datasets
Motif DE_24h DE_24h-Hoxa13_MA0650.4 8 bp overlap
Motif DE_36h DE_36h-Hoxa13_MA0650.4 8 bp overlap
IKZF1 2 datasets
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 599 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 333 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 537 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 686 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 492 bp overlap
MAZ 3 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
NANOG 1 dataset
ChIP GM23338 ENCFF065NZG 311 bp overlap
POLR2A 1 dataset
ChIP Peyer's patch ENCFF990IYL 143 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 603 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 500 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Pax7 2 datasets
Motif DE_24h DE_24h-Pax7_MA0680.3 10 bp overlap
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
REL 2 datasets
Motif DE_24h DE_24h-REL_MA0101.1 10 bp overlap
Motif DE_36h DE_36h-REL_MA0101.1 10 bp overlap
RELA 2 datasets
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
RNF219 1 dataset
ChIP HepG2 ENCFF710YJO 251 bp overlap
RORA 2 datasets
Motif DE_24h DE_24h-RORA_MA0072.2 11 bp overlap
Motif DE_36h DE_36h-RORA_MA0072.2 11 bp overlap
SATB1 4 datasets
Motif DE_24h DE_24h-SATB1_MA1963.2 7 bp overlap
Motif DE_24h DE_24h-SATB1_MA1963.2 7 bp overlap
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 377 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 506 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 653 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 616 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 701 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 588 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 456 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 176 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 170 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 313 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 274 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 595 bp overlap
SOX21 1 dataset
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
SREBF1 2 datasets
Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap
Motif DE_36h DE_36h-SREBF1_MA0829.3 10 bp overlap
SREBF2 2 datasets
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
Sox1 1 dataset
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Spi1 2 datasets
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TCF4 3 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
Motif DE_36h DE_36h-TCF4_MA0830.3 8 bp overlap
TFDP1 2 datasets
Motif DE_24h DE_24h-TFDP1_MA1122.2 8 bp overlap
Motif DE_36h DE_36h-TFDP1_MA1122.2 8 bp overlap
TRPS1 2 datasets
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
VEZF1 3 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 485 bp overlap
ZEB1 3 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF320 2 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF341 3 datasets
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
Motif DE_24h DE_24h-ZNF341_MA1655.2 8 bp overlap
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 193 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 64 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap
ZNF701 3 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
ZNF707 3 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap