chr3 : 115,660,788 115,661,326
538 bp 67 TFs 1 linked gene
This 538 bp open chromatin element is linked to ENSG00000241596 and is bound by 67 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000241596 2.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:115,655,788 – 115,666,326
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 2 datasets
ChIP MCF-7 ERP001226.AR.MCF-7 188 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 112 bp overlap
ASCL1 2 datasets
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 199 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 178 bp overlap
ATF6 1 dataset
Motif DE_60h DE_60h-ATF6_MA1466.2 13 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 155 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 207 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 183 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 70 bp overlap
CREB3L1 1 dataset
Motif DE_60h DE_60h-CREB3L1_MA0839.2 13 bp overlap
Cebpa 6 datasets
ChIP BLaER1 ENCFF093OYK 538 bp overlap
ChIP BLaER1 ENCFF274GAT 108 bp overlap
ChIP BLaER1 ENCFF364PUR 535 bp overlap
ChIP BLaER1 ENCFF844FIP 407 bp overlap
ChIP BLaER1 ENCFF858JKM 359 bp overlap
ChIP BLaER1 ENCFF858JKM 379 bp overlap
DPRX 2 datasets
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
EBF1 3 datasets
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
ChIP LCL GSE75503.EBF1.LCL 373 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 538 bp overlap
EBF3 1 dataset
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
ESR1 87 datasets
Motif DE_48h DE_48h-ESR1_MA0112.4 15 bp overlap
ChIP MCF-7 GSE117492.ESR1.MCF-7 365 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 326 bp overlap
ChIP MCF-7 GSE128445.ESR1.MCF-7 278 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 260 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 264 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 230 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 220 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 188 bp overlap
ChIP MCF-7 GSE60270.ESR1.MCF-7 136 bp overlap
ChIP MCF-7 GSE95302.ESR1.MCF-7 193 bp overlap
ChIP MCF-7_1-6-HD GSE117492.ESR1.MCF-7_1-6-HD 333 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 275 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 263 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_clone14 181 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 169 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 241 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 296 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 344 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 277 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 165 bp overlap
ChIP MCF-7_E2 GSE73956.ESR1.MCF-7_E2 225 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 252 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 140 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 173 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 158 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 224 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 226 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 200 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 191 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 327 bp overlap
ChIP MCF-7_E2_Dex GSE81510.ESR1.MCF-7_E2_Dex 239 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 213 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 246 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 224 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 248 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 211 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 234 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 318 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 219 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 150 bp overlap
ChIP MCF-7_SHCTR_E2 GSE60270.ESR1.MCF-7_SHCTR_E2 188 bp overlap
ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 190 bp overlap
ChIP MCF-7_SHFOXA1_E2_TNF GSE59530.ESR1.MCF-7_SHFOXA1_E2_TNF 134 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 110 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 226 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 275 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 268 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 167 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 298 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 249 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 226 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 243 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 231 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 298 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 303 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 138 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 138 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 295 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 318 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 178 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 415 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 366 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 468 bp overlap
ChIP T-47D ENCSR000BKN.ESR1.T-47D 181 bp overlap
ChIP T-47D ENCSR000BJS.ESR1.T-47D 173 bp overlap
ChIP T-47D ENCSR000BQD.ESR1.T-47D 138 bp overlap
ChIP T-47D_CR3flp GSE99479.ESR1.T-47D_CR3flp 273 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 492 bp overlap
ChIP T-47D_JC4732 GSE126004.ESR1.T-47D_JC4732 277 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 504 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 538 bp overlap
ChIP T-47D_flp-ctrl GSE99479.ESR1.T-47D_flp-ctrl 263 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 278 bp overlap
ChIP T-47D_siCont-Veh GSE126004.ESR1.T-47D_siCont-Veh 224 bp overlap
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 229 bp overlap
ChIP T-47D_siFOXA1-Veh GSE126004.ESR1.T-47D_siFOXA1-Veh 323 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 228 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 331 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 337 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 330 bp overlap
ChIP ZR751_E2_TAM ERP000380.ESR1.ZR751_E2_TAM 232 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 217 bp overlap
ChIP breast_tumor-xenograft_3_E2_P4 GSE93108.ESR1.breast_tumor-xenograft_3_E2_P4 177 bp overlap
ChIP breast_tumor_Male_5 GSE104399.ESR1.breast_tumor_Male_5 250 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 262 bp overlap
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 168 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 368 bp overlap
ESR1_Y537S 4 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 202 bp overlap
ChIP T-47D_E2 GSE94493.ESR1_Y537S.T-47D_E2 264 bp overlap
ChIP T-47D_dox GSE94493.ESR1_Y537S.T-47D_dox 203 bp overlap
ChIP T-47D_dox_E2 GSE94493.ESR1_Y537S.T-47D_dox_E2 253 bp overlap
ESR2 1 dataset
Motif DE_48h DE_48h-ESR2_MA0258.2 15 bp overlap
Ebf4 1 dataset
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
FLI1 1 dataset
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 330 bp overlap
FOXA1 3 datasets
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 268 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 249 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 202 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 451 bp overlap
ChIP DE DE-FOXA2-2 416 bp overlap
GATA1 2 datasets
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA3 2 datasets
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 281 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 181 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 533 bp overlap
ChIP DE DE-GATA4-2 529 bp overlap
ChIP foregut GSE117136.GATA4.foregut 251 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 464 bp overlap
ChIP DE DE-GATA6-2 536 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 321 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 428 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 208 bp overlap
Irf1 1 dataset
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 115 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 164 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 196 bp overlap
MED12 1 dataset
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 57 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 350 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 117 bp overlap
MYCN 1 dataset
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 116 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 177 bp overlap
MYOD1 3 datasets
ChIP RD GSE137168.MYOD1.RD 205 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 200 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 230 bp overlap
MZF1 1 dataset
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 249 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 197 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 183 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 182 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 186 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 434 bp overlap
NR2C1 1 dataset
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR3C1 2 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 278 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 140 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE126300.PAX5.NALM-6 538 bp overlap
ChIP NALM-6 GSE115764.PAX5.NALM-6 243 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 538 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 80 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 85 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 154 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 503 bp overlap
RELA 1 dataset
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 299 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 247 bp overlap
RFX4 1 dataset
Motif DE_60h DE_60h-RFX4_MA0799.3 13 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 538 bp overlap
Rfx6 1 dataset
Motif DE_60h DE_60h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 433 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 161 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 334 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 354 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
TCF3 2 datasets
ChIP 697_HF GSE138031.TCF3.697_HF 360 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 538 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 196 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 538 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 146 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 146 bp overlap
ZIM3 1 dataset
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap