chr3 : 108,608,860 108,609,138
278 bp 69 TFs 0 linked genes
This 278 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:108,603,860 – 108,614,138
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
ATF3 1 dataset
ChIP K562 ENCFF965VXT 227 bp overlap
Alx1 1 dataset
Motif ES_0h ES_0h-Alx1_MA0854.2 8 bp overlap
Arnt 1 dataset
Motif ES_0h ES_0h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif ES_0h ES_0h-Arntl_MA0603.2 8 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CTCF 49 datasets
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF531QOI 189 bp overlap
ChIP GM23338 ENCFF531QOI 244 bp overlap
ChIP GM23338 ENCFF772DML 186 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 250 bp overlap
ChIP H9 ENCFF152GTF 260 bp overlap
ChIP H9 ENCFF152GTF 215 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 254 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 232 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 257 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 230 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 229 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 235 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 234 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 111 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 278 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 200 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 176 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 139 bp overlap
ChIP K-562_sgGal4 GSE132212.CTCF.K-562_sgGal4 179 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF111MGE 181 bp overlap
ChIP K562 ENCFF400DFR 120 bp overlap
ChIP K562 ENCFF430KTH 278 bp overlap
ChIP OCI-LY1 ENCFF455ESK 278 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 260 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 161 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 105 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 227 bp overlap
ChIP endodermal cell ENCFF471YCZ 251 bp overlap
ChIP hESC GSE20650.CTCF.hESC 126 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 162 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 271 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 173 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 176 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 125 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 156 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 143 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 146 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 225 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 199 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 173 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 221 bp overlap
ChIP neural progenitor cell ENCFF420RBO 190 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 227 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 138 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
DUX4 1 dataset
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
Dux 1 dataset
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 144 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 68 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
Gfi1B 1 dataset
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
Gli1 1 dataset
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 278 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
MAX 4 datasets
Motif ES_0h ES_0h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF914VQY 112 bp overlap
ChIP K562 ENCFF524IJO 100 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 161 bp overlap
MAZ 2 datasets
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 106 bp overlap
MLX 1 dataset
Motif ES_0h ES_0h-MLX_MA0663.1 10 bp overlap
MLXIPL 1 dataset
Motif ES_0h ES_0h-MLXIPL_MA0664.2 8 bp overlap
MNT 3 datasets
Motif ES_0h ES_0h-MNT_MA0825.2 6 bp overlap
ChIP K-562 ENCSR512NLO.MNT.K-562 243 bp overlap
ChIP K-562 ENCSR390VGH.MNT.K-562 164 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
MYC 1 dataset
Motif ES_0h ES_0h-MYC_MA0147.4 8 bp overlap
Mlxip 1 dataset
Motif ES_0h ES_0h-Mlxip_MA0622.2 6 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF163BSI 258 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PHOX2A 1 dataset
Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
PRDM1 1 dataset
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif ES_0h ES_0h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 82 bp overlap
ChIP H1 ENCFF967OJF 229 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 173 bp overlap
ChIP K562 ENCFF169SQI 171 bp overlap
ChIP K562 ENCFF634XYR 278 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 175 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 160 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 153 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
REST 2 datasets
ChIP K-562 ENCSR137ZMQ.REST.K-562 278 bp overlap
ChIP K562 ENCFF688UKW 278 bp overlap
SMC3 1 dataset
ChIP K-562 ENCSR000EGW.SMC3.K-562 115 bp overlap
SPIC 1 dataset
Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
USF1 1 dataset
ChIP K562 ENCFF633EZB 247 bp overlap
USF2 1 dataset
ChIP H1 ENCFF434EDF 265 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 268 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 127 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF343 1 dataset
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF701 1 dataset
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF766 2 datasets
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ChIP K562 ENCFF348LDO 278 bp overlap