chr1 : 61,301,051 – 61,301,226

175 bp 63 TFs 0 linked genes

This 175 bp open chromatin element has no linked target genes and is bound by 63 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

63 transcription factors

ARID4B 1 dataset

ChIP HepG2 ENCFF519OXJ 68 bp overlap

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 137 bp overlap

ATF4 1 dataset

Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BRD4 1 dataset

ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 148 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CREB1 4 datasets

Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap

ChIP GM23338 ENCFF432ZEW 175 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 175 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 146 bp overlap

CTCF 2 datasets

ChIP C4-2B ENCFF821XVN 175 bp overlap

ChIP mesothelial cell of epicardium ENCFF427RFE 111 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 157 bp overlap

EPAS1 1 dataset

Motif DE_12h DE_12h-EPAS1_MA2325.1 9 bp overlap

FLI1 1 dataset

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 170 bp overlap

FOXA1 3 datasets

ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 90 bp overlap

ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 175 bp overlap

ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 73 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 141 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

Hmx1 1 dataset

Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap

Hmx3 1 dataset

Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap

ISL2 1 dataset

Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

MAX 1 dataset

ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 175 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 175 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 175 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 175 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 175 bp overlap

NKX2-3 1 dataset

Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap

Nkx3-2 1 dataset

Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU5F1 14 datasets

ChIP BG03 GSE21614.POU5F1.BG03 103 bp overlap

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP H1 ENCFF698ZAP 165 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 175 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 175 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 175 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 164 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 175 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 175 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 165 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 175 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 175 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 175 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 152 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 57 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RUNX1 1 dataset

ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 164 bp overlap

SMARCA4 4 datasets

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 158 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 175 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 175 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 175 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 117 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 175 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 175 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 175 bp overlap

SOX2 5 datasets

ChIP H9 GSE46837.SOX2.H9 175 bp overlap

ChIP HNSC GSE69479.SOX2.HNSC 162 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 136 bp overlap

ChIP hESC GSE18292.SOX2.hESC 98 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 175 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 175 bp overlap

SPI1 2 datasets

ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 126 bp overlap

ChIP DC_LPS GSE123347.SPI1.DC_LPS 110 bp overlap

TBX19 1 dataset

Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap

TBXT 1 dataset

Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 108 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 175 bp overlap

USF1 3 datasets

ChIP H1 ENCFF090WVU 115 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 119 bp overlap

ChIP WTC11 ENCFF699QGS 175 bp overlap

USF2 1 dataset

ChIP WTC11 ENCFF139JAW 175 bp overlap

ZNF143 1 dataset

ChIP WA01 ENCSR000EBW.ZNF143.WA01 97 bp overlap

ZNF184 1 dataset

ChIP WTC11 ENCFF352POG 175 bp overlap

ZNF19 1 dataset

ChIP HEK293T GSE78099.ZNF19.HEK293T 105 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 175 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 175 bp overlap

ZNF496 1 dataset

ChIP HEK293T GSE78099.ZNF496.HEK293T 65 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap