chr3 : 55,484,296 55,484,639
343 bp 44 TFs 2 linked genes
This 343 bp open chromatin element is linked to WNT5A and WNT5A-AS1 and is bound by 44 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
WNT5A 2.7 kb Proximal Proximity
WNT5A-AS1 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:55,479,296 – 55,489,639
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 196 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 266 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 343 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 204 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 343 bp overlap
BRD4 4 datasets
ChIP LPS141 GSE111253.BRD4.LPS141 343 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 343 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 193 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 161 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 67 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 181 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 343 bp overlap
CTCF 3 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 86 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 210 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 70 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 142 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 151 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 127 bp overlap
EZH2 9 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 343 bp overlap
ChIP GM23338 ENCFF613YON 267 bp overlap
ChIP H1 ENCFF232NZA 343 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 343 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 343 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 241 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 152 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 343 bp overlap
ChIP neural progenitor cell ENCFF472NFV 343 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 56 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 330 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 333 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 238 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 343 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 343 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 149 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 102 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 267 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 62 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 331 bp overlap
NR3C1 1 dataset
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 256 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 343 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 319 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 211 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 343 bp overlap
ChIP H1 ENCFF239FFS 343 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 272 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 246 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 233 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 303 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 343 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 273 bp overlap
SMARCA4 5 datasets
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 196 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 229 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 291 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 271 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 172 bp overlap
SMC1 3 datasets
ChIP DKO GSE131606.SMC1.DKO 159 bp overlap
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 196 bp overlap
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 219 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 180 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 267 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 215 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 320 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 343 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 214 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 343 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 186 bp overlap
TP53 1 dataset
ChIP GM06170 GSE55727.TP53.GM06170 140 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 306 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 236 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 338 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 294 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 119 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 93 bp overlap