chr3 : 24,389,110 – 24,389,385
275 bp 62 TFs 0 linked genes
This 275 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:24,384,110 – 24,394,385
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 2 datasets
ChIP LHSAR_HOXB13 GSE56288.AR.LHSAR_HOXB13 54 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 90 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 163 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 81 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD4 2 datasets
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 275 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 243 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT916 GSE128230.CDK8.leiomyoma_PT916 67 bp overlap
CEBPB 1 dataset
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 101 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 70 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 191 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 97 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EP300 4 datasets
ChIP Ishikawa ENCFF364ZWT 51 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 132 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 150 bp overlap
ChIP neural cell ENCFF442QNK 275 bp overlap
ESR1 12 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 143 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 100 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 132 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 117 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 172 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 195 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 168 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 184 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 103 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 122 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 113 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 153 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 129 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 96 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA5 1 dataset
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 14 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 66 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 81 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 51 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 95 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 140 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 111 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 142 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 69 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 136 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 135 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 53 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 170 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 83 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 114 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MED12 2 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 111 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 95 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 147 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 70 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 138 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 275 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 264 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 141 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 225 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 216 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 75 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 158 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 275 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 119 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 165 bp overlap
SRF 2 datasets
ChIP Ishikawa ENCFF992QXM 186 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 135 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 219 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 72 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 140 bp overlap
TEAD4 4 datasets
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 85 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 125 bp overlap
ChIP Ishikawa ENCFF772OTG 56 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 133 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 103 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 122 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 53 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 263 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 104 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
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