chr3 : 18,482,086 18,482,487
401 bp 60 TFs 0 linked genes
This 401 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:18,477,086 – 18,487,487
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 210 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 193 bp overlap
BRD4 4 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 213 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 309 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 291 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 224 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 379 bp overlap
CEBPA 7 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 72 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 112 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 185 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 171 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 130 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 104 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 125 bp overlap
CEBPB 5 datasets
ChIP A549 ENCFF235AIY 145 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 221 bp overlap
ChIP HeLa-S3 ENCFF722WEG 129 bp overlap
ChIP IMR-90 ENCFF468UGY 140 bp overlap
ChIP K562 ENCFF584CTB 280 bp overlap
CEBPG 3 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 148 bp overlap
ChIP K562 ENCFF956TPS 268 bp overlap
ChIP MCF-7 ENCFF155HZI 272 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 138 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 312 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF140EYR 320 bp overlap
ChIP BLaER1 ENCFF346MCV 174 bp overlap
ChIP BLaER1 ENCFF798NMV 343 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 181 bp overlap
ERG 2 datasets
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 165 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 120 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 235 bp overlap
FOSL2 1 dataset
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 130 bp overlap
GATA1 4 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 51 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 170 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 151 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 63 bp overlap
GATA2 4 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 150 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 150 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 401 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 186 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 401 bp overlap
ChIP DE DE-GATA4-2 328 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 401 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 201 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 363 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 189 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 335 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 133 bp overlap
ChIP DE DE-GATA6-1 391 bp overlap
ChIP DE DE-GATA6-2 374 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 340 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 401 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 333 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 401 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 401 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 359 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 178 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 189 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 341 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 314 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 204 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 204 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 123 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 262 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 278 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 401 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 111 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 320 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 123 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 202 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 279 bp overlap
MLLT3 1 dataset
ChIP THP-1 GSE79899.MLLT3.THP-1 197 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 139 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 187 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 105 bp overlap
NR4A1 2 datasets
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 146 bp overlap
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 340 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 383 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 266 bp overlap
RNF2 1 dataset
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 212 bp overlap
RUNX1 3 datasets
ChIP 697 GSE138031.RUNX1.697 214 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 190 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 190 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 401 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 401 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 205 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 401 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 401 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 285 bp overlap
SPI1 2 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 185 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 170 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 75 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TAL1 3 datasets
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 133 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 180 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 229 bp overlap
TARDBP 2 datasets
ChIP HepG2 ENCFF132LKJ 55 bp overlap
ChIP HepG2 ENCFF609NMG 61 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 98 bp overlap
TP63 7 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 216 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 104 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 73 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 144 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 123 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 115 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 110 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 234 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 285 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 72 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 141 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 357 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 310 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 252 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 401 bp overlap