chr3 : 11,638,230 – 11,638,504
274 bp 53 TFs 1 linked gene
This 274 bp open chromatin element is linked to VGLL4 and is bound by 53 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VGLL4 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:11,633,230 – 11,643,504
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 274 bp overlap
BHLHE40 5 datasets
ChIP IMR-90 ENCFF312JYK 52 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 115 bp overlap
ChIP K-562 ENCSR000EGV.BHLHE40.K-562 75 bp overlap
ChIP K562 ENCFF923NJI 128 bp overlap
ChIP K562 ENCFF923NJI 256 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 220 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 235 bp overlap
BRD4 11 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 274 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 274 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 197 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 66 bp overlap
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 111 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 129 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 77 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 271 bp overlap
ChIP K-562_iBET-BD1 GSE138084.BRD4.K-562_iBET-BD1 239 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 181 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 246 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 131 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT1063 GSE128230.CDK8.leiomyoma_PT1063 57 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 84 bp overlap
CHD1 2 datasets
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 209 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 177 bp overlap
CTCF 1 dataset
ChIP dorsolateral prefrontal cortex ENCFF476NBQ 205 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 137 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 63 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 127 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 76 bp overlap
FOXA1 2 datasets
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 72 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 108 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 171 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 145 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 228 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 254 bp overlap
ChIP DE DE-GATA6-2 274 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 274 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 201 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 195 bp overlap
HNRNPK 3 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 166 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 159 bp overlap
ChIP HepG2 ENCFF826MXP 256 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 139 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 220 bp overlap
KMT2A 8 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 201 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 89 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 269 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 224 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 112 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 73 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 126 bp overlap
ChIP MCF-7_C-term_DMSO GSE90762.KMT2A.MCF-7_C-term_DMSO 195 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 220 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 50 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 137 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 142 bp overlap
MXI1 2 datasets
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 116 bp overlap
ChIP SK-N-SH ENCFF746HVJ 224 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 240 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 126 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 231 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 274 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 59 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 274 bp overlap
POLR2A 2 datasets
ChIP endothelial cell of umbilical vein ENCFF091YHT 218 bp overlap
ChIP suprapubic skin ENCFF832BBO 223 bp overlap
PROX1 1 dataset
ChIP HUVEC-C_Prox1OE GSE71230.PROX1.HUVEC-C_Prox1OE 182 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 210 bp overlap
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 169 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 251 bp overlap
RELA 5 datasets
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 75 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 101 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 106 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 62 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 117 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 274 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 155 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 115 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 197 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 91 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 62 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 64 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 274 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 68 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 274 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 274 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 274 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 54 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 167 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCFF066NGR 274 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 274 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 226 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 274 bp overlap
ChIP HEK293 ENCFF336CWQ 274 bp overlap
ZNF34 1 dataset
ChIP HEK293 ENCFF481TFV 70 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 165 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 274 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 57 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 155 bp overlap
ZNF513 2 datasets
ChIP HEK293 ENCFF457TCC 259 bp overlap
ChIP HEK293 ENCSR503DPC.ZNF513.HEK293 149 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 129 bp overlap
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