chr3 : 5,185,574 5,185,804
230 bp 61 TFs 3 linked genes
This 230 bp open chromatin element is linked to ENSG00000233912, EDEM1, and ENSG00000268509 and is bound by 61 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000233912 1.5 kb Proximal Proximity
EDEM1 1.8 kb Proximal Proximity
ENSG00000268509 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:5,180,574 – 5,190,804
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K562 ENCFF583EEH 218 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 116 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCFF655FLB 230 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 161 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCFF037PYH 77 bp overlap
BCL6 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 103 bp overlap
BRD4 2 datasets
ChIP MM1-S GSE43743.BRD4.MM1-S 230 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 230 bp overlap
CAMTA2 1 dataset
ChIP K562 ENCFF975FJR 188 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 142 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 73 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 175 bp overlap
ChIP K562 ENCFF403WPG 92 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 70 bp overlap
ChIP K562 ENCFF739JDE 89 bp overlap
E2F8 1 dataset
ChIP K-562 ENCSR953DVM.E2F8.K-562 131 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 230 bp overlap
ESRRA 3 datasets
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 64 bp overlap
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 141 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 74 bp overlap
GATA1 1 dataset
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 144 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 63 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 174 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 55 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 191 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 52 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 88 bp overlap
ChIP K562 ENCFF928TKZ 106 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 95 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 70 bp overlap
ChIP K562 ENCFF744ALD 50 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 230 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 143 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR854MCV.IRF1.K-562 148 bp overlap
KDM1A 1 dataset
ChIP K562 ENCFF133OLU 205 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 178 bp overlap
MBD1 1 dataset
ChIP K562 ENCFF741LIL 120 bp overlap
MEF2B 3 datasets
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
Motif ES_0h ES_0h-MEF2B_MA0660.1 12 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 150 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 223 bp overlap
MTA3 2 datasets
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 96 bp overlap
ChIP K-562 ENCSR180NCY.MTA3.K-562 157 bp overlap
MXI1 1 dataset
ChIP GM12878 ENCFF666NJR 230 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 230 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 168 bp overlap
NKX2-4 2 datasets
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 2 datasets
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 230 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 140 bp overlap
PHB 1 dataset
ChIP K562 ENCFF225VHG 230 bp overlap
POLR2A 5 datasets
ChIP GM12878 ENCFF263VRI 230 bp overlap
ChIP GM12892 ENCFF245LYF 230 bp overlap
ChIP GM19099 ENCFF726IBN 152 bp overlap
ChIP Raji ENCFF613VGX 230 bp overlap
ChIP spleen ENCFF044PYR 230 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF241AEG 230 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 202 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 216 bp overlap
PPARG 2 datasets
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
Motif ES_0h ES_0h-PPARG_MA0066.2 19 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RBM39 1 dataset
ChIP K-562 GSE120104.RBM39.K-562 180 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 157 bp overlap
RNF219 1 dataset
ChIP K562 ENCFF179FVL 193 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 130 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 77 bp overlap
ChIP K562 ENCFF316MCJ 104 bp overlap
ChIP K562 ENCFF506JCB 92 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 107 bp overlap
ChIP K562 ENCFF690CFF 134 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 123 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 89 bp overlap
TBP 1 dataset
ChIP K562 ENCFF901UYM 230 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 212 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 230 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZNF317 1 dataset
ChIP K562 ENCFF896LCF 230 bp overlap
ZNF551 1 dataset
ChIP K562 ENCFF811DCL 113 bp overlap
ZNF668 1 dataset
ChIP K562 ENCFF112IUE 230 bp overlap
ZNF83 1 dataset
ChIP K562 ENCFF340RTV 230 bp overlap