chr3 : 3,802,000 3,802,372
372 bp 46 TFs 1 linked gene
This 372 bp open chromatin element is linked to LRRN1 and is bound by 46 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LRRN1 2.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:3,797,000 – 3,807,372
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AR 1 dataset
ChIP PC-3 GSE54110.AR.PC-3 170 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 218 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 335 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 97 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 159 bp overlap
ATF3 2 datasets
ChIP H1 ENCFF852GZY 222 bp overlap
ChIP WA01 ENCSR000BKC.ATF3.WA01 206 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 372 bp overlap
BRD4 3 datasets
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 273 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 372 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 124 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 220 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 140 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 372 bp overlap
ChIP H1 ENCFF998XEK 372 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 65 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 291 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 263 bp overlap
EP300 2 datasets
ChIP neural cell ENCFF442QNK 372 bp overlap
ChIP neural cell ENCFF442QNK 179 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 127 bp overlap
EZH2 4 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 131 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 267 bp overlap
ChIP T98G GSE112240.EZH2.T98G 299 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 214 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 297 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 286 bp overlap
ChIP WTC11 ENCFF223QFY 213 bp overlap
ChIP WTC11 ENCFF223QFY 372 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 363 bp overlap
ChIP neural cell ENCFF623HQN 162 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 243 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 179 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 114 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 93 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 59 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 229 bp overlap
POLR2A 5 datasets
ChIP H1 ENCFF770YBQ 357 bp overlap
ChIP H1 ENCFF833NJP 318 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 372 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 372 bp overlap
ChIP neural cell ENCFF604SPB 177 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 202 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 175 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 308 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 353 bp overlap
ChIP neural cell ENCFF564MOT 321 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 321 bp overlap
ChIP neural cell ENCFF882LXX 372 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 250 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 372 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 136 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 372 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 112 bp overlap
SIRT6 1 dataset
ChIP H1 ENCFF843QCB 265 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 258 bp overlap
SMARCA4 5 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 99 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 212 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 358 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 55 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 132 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 136 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 303 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 108 bp overlap
SOX2 3 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 222 bp overlap
ChIP NPC GSE122631.SOX2.NPC 82 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 214 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 254 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 234 bp overlap
STAT1 1 dataset
ChIP THP-1 GSE128111.STAT1.THP-1 131 bp overlap
TAF1 4 datasets
ChIP H1 ENCFF478SZO 372 bp overlap
ChIP H1 ENCFF478SZO 179 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 271 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 104 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 243 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 178 bp overlap
ChIP hESC GSE122298.TBP.hESC 132 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 196 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 167 bp overlap
ZNF143 3 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 302 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 155 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 198 bp overlap