chr1 : 50,569,789 50,570,519
730 bp 80 TFs 0 linked genes
This 730 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:50,564,789 – 50,575,519
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1_pLKO GSE109748.AR.22Rv1_pLKO 137 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 566 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 318 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 369 bp overlap
CEBPA 1 dataset
ChIP SKH1_CEBPA-ER_E2 GSE102697.CEBPA.SKH1_CEBPA-ER_E2 131 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 505 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 277 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 178 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 273 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 556 bp overlap
FOXA1 14 datasets
ChIP A-549 ENCSR000BRD.FOXA1.A-549 200 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 179 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 590 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 670 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 730 bp overlap
Motif DE_36h DE_36h-FOXA1_MA0148.5 8 bp overlap
ChIP HepG2 ENCFF207NVJ 114 bp overlap
ChIP HepG2 ENCFF361KNY 285 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 419 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 659 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 452 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 227 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 310 bp overlap
FOXA2 15 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 608 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 565 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 287 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 543 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 351 bp overlap
ChIP DE DE-FOXA2-1 730 bp overlap
ChIP DE DE-FOXA2-2 707 bp overlap
Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF570ABM 163 bp overlap
ChIP HepG2 ENCFF894AYY 381 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 461 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 340 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 208 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 444 bp overlap
FOXA3 1 dataset
Motif DE_36h DE_36h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_36h DE_36h-FOXD1_MA0031.2 7 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
FOXF2 1 dataset
Motif DE_36h DE_36h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_36h DE_36h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap
FOXL2 2 datasets
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 178 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 468 bp overlap
FOXO4 1 dataset
Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_36h DE_36h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_36h DE_36h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 64 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 76 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 663 bp overlap
ChIP DE DE-GATA4-2 730 bp overlap
ChIP foregut GSE117136.GATA4.foregut 440 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 371 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 622 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 237 bp overlap
ChIP DE DE-GATA6-1 628 bp overlap
ChIP DE DE-GATA6-2 728 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 466 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 582 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 598 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 654 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 598 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 396 bp overlap
ChIP foregut GSE117136.GATA6.foregut 503 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 308 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 493 bp overlap
HNF4A 1 dataset
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 79 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 315 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 219 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 392 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 310 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 433 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 549 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 448 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 414 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 208 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 250 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_HOTTIP-KO GSE114981.KMT2A.MOLM-13_HOTTIP-KO 187 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 230 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 82 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 293 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 226 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 196 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 172 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 448 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 207 bp overlap
PHF21A 2 datasets
ChIP Hep-G2 ENCSR315VYZ.PHF21A.Hep-G2 242 bp overlap
ChIP HepG2 ENCFF525EUW 637 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 122 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 486 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF820WZN 345 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 350 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 449 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 421 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 429 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 497 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 178 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 80 bp overlap
RUNX1 1 dataset
ChIP THP-1 GSE79899.RUNX1.THP-1 185 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 224 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 695 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 730 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 566 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 490 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 645 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 433 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 420 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 508 bp overlap
SMAD3 2 datasets
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 214 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 189 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 150 bp overlap
SMARCA2 3 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 246 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 318 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 341 bp overlap
SMARCA4 10 datasets
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 88 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 81 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 92 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 135 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 349 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 267 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 258 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 730 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 219 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 648 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 619 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 401 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 589 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 162 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 574 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 281 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 269 bp overlap
ZNF135 1 dataset
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
ZNF596 3 datasets
ChIP HEK293 ENCFF854MGB 321 bp overlap
ChIP HEK293 ENCFF854MGB 321 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 216 bp overlap