chr1 : 48,471,099 48,471,393
294 bp 54 TFs 1 linked gene
This 294 bp open chromatin element is linked to SPATA6 and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SPATA6 622 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:48,466,099 – 48,476,393
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 61 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 171 bp overlap
BRD3 2 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 134 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 254 bp overlap
BRD4 4 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 160 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 71 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 116 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 159 bp overlap
CEBPA 1 dataset
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 90 bp overlap
CEBPB 6 datasets
ChIP A549 ENCFF781RLJ 115 bp overlap
ChIP H1 ENCFF871PTR 80 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 220 bp overlap
ChIP IMR-90 ENCFF468UGY 84 bp overlap
ChIP K562 ENCFF189VBN 126 bp overlap
ChIP K562 ENCFF584CTB 216 bp overlap
CEBPD 1 dataset
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 94 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 189 bp overlap
CTCF 2 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 84 bp overlap
ChIP fibroblast of lung ENCFF084DUH 76 bp overlap
Cebpa 8 datasets
ChIP BLaER1 ENCFF031ISE 272 bp overlap
ChIP BLaER1 ENCFF093OYK 187 bp overlap
ChIP BLaER1 ENCFF274GAT 168 bp overlap
ChIP BLaER1 ENCFF335XTP 198 bp overlap
ChIP BLaER1 ENCFF364PUR 246 bp overlap
ChIP BLaER1 ENCFF460KDD 263 bp overlap
ChIP BLaER1 ENCFF844FIP 205 bp overlap
ChIP BLaER1 ENCFF896HSY 186 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 93 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 169 bp overlap
EGR1 1 dataset
ChIP T-HESCs GSE141063.EGR1.T-HESCs 167 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 164 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 72 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 294 bp overlap
HNRNPLL 1 dataset
ChIP K562 ENCFF598PWW 59 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 182 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 212 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 142 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 210 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 89 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 145 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 294 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 203 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 192 bp overlap
MED1 2 datasets
ChIP RH4 GSE83726.MED1.RH4 60 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 191 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 294 bp overlap
MYOD1 2 datasets
ChIP RD GSE137168.MYOD1.RD 248 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 252 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 179 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 78 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 241 bp overlap
POLR2A 2 datasets
ChIP gastroesophageal sphincter ENCFF238INU 294 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 270 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 243 bp overlap
PRDM1 1 dataset
ChIP HEK293 GSE76494.PRDM1.HEK293 194 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 179 bp overlap
RELA 2 datasets
ChIP 786-O GSE86092.RELA.786-O 130 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 236 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 68 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 165 bp overlap
SOX8 2 datasets
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 185 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 254 bp overlap
SP2 2 datasets
ChIP HEK293 ENCSR807LQP.SP2.HEK293 230 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 147 bp overlap
SP3 1 dataset
ChIP HEK293 ENCSR141PZA.SP3.HEK293 287 bp overlap
STAT3 1 dataset
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 111 bp overlap
SUZ12 1 dataset
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 58 bp overlap
YY2 1 dataset
ChIP HEK293 ENCFF997QEP 294 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 294 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 217 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 223 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 217 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 243 bp overlap
ZNF425 1 dataset
ChIP HEK293T GSE78099.ZNF425.HEK293T 98 bp overlap