Predicted to enable myosin light chain binding activity. Predicted to be involved in motile cilium assembly and spermatogenesis. Predicted to be located in extracellular region and motile cilium. Predicted to be active in sperm head-tail coupling apparatus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for SPATA6. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SPATA6 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SPATA6, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:48,208,078–48,209,322 | 263.3 kb | Distal (>10kb) Multiome | 64 | |
| chr1:48,214,255–48,215,241 | 257.6 kb | Distal (>10kb) Multiome | 110 | |
| chr1:48,442,425–48,443,673 | 29.1 kb | Distal (>10kb) Multiome | 216 | |
| chr1:48,470,665–48,470,814 | 1.2 kb | Proximal (<10kb) | 40 | |
| chr1:48,471,099–48,471,393 | 622 bp | At TSS | 54 | |
| chr1:48,471,474–48,472,912 | 13 bp | At TSS Multiome | 545 | |
| chr1:48,480,437–48,481,014 | 8.4 kb | Proximal (<10kb) | 107 | |
| chr1:48,498,158–48,499,133 | 26.4 kb | Distal (>10kb) Multiome | 244 | |
| chr1:48,499,218–48,501,656 | 28.7 kb | Distal (>10kb) Multiome | 297 | |
| chr1:48,530,436–48,531,227 | 58.7 kb | Distal (>10kb) Multiome | 414 | |
| chr1:48,619,320–48,619,966 | 147.6 kb | Distal (>10kb) Multiome | 146 | |
| chr1:48,710,269–48,710,755 | 238.4 kb | Distal (>10kb) Multiome | 42 | |
| chr1:50,420,661–50,421,743 | 1949.1 kb | Distal (>10kb) Multiome HiCAR | 164 | |
| chr1:50,422,450–50,424,285 | 1951.3 kb | Distal (>10kb) Multiome HiCAR | 446 |
Genomic view of the SPATA6 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.