chr1 : 48,470,665 48,470,814
149 bp 40 TFs 1 linked gene
This 149 bp open chromatin element is linked to SPATA6 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SPATA6 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:48,465,665 – 48,475,814
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 147 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 149 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 149 bp overlap
BRD4 2 datasets
ChIP RH4 GSE83726.BRD4.RH4 149 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 134 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 103 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 104 bp overlap
CTCF 41 datasets
ChIP AG04450 ENCFF116DJL 149 bp overlap
ChIP AG10803 ENCFF549AQK 149 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 149 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 139 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 149 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 121 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 142 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 54 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 77 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 126 bp overlap
ChIP body of pancreas ENCFF269EDN 149 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 149 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 149 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 149 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 149 bp overlap
ChIP coronary-artery ENCSR175FLL.CTCF.coronary-artery 149 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 149 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 58 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 90 bp overlap
ChIP endodermal cell ENCFF471YCZ 149 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 136 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 149 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 149 bp overlap
ChIP fibroblast of lung ENCFF084DUH 149 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 149 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 149 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 149 bp overlap
ChIP gastroesophageal sphincter ENCFF582GAX 149 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 143 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 141 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 149 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 149 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 149 bp overlap
ChIP islet ERP004003.CTCF.islet 105 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 149 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 149 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 149 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 73 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 149 bp overlap
ChIP sigmoid colon ENCFF086DZH 128 bp overlap
ChIP testis ENCFF409BGH 149 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 149 bp overlap
E2F1 2 datasets
ChIP LNCaP-abl GSE67809.E2F1.LNCaP-abl 149 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 149 bp overlap
E2F6 4 datasets
ChIP H1 ENCFF785DWK 149 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 119 bp overlap
ChIP K562 ENCFF136LTS 149 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 149 bp overlap
ERG 9 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 141 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 140 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 149 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 143 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 149 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 149 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 113 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 149 bp overlap
ChIP aortic-endothelial-cell_D53 GSE139377.ERG.aortic-endothelial-cell_D53 110 bp overlap
ETV1 1 dataset
ChIP GIST GSE22441.ETV1.GIST 149 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 149 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 137 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 149 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 149 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 149 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 149 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 139 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 149 bp overlap
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 149 bp overlap
MAX 8 datasets
ChIP H1 ENCFF914VQY 149 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 149 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 149 bp overlap
ChIP HepG2 ENCFF507HCX 149 bp overlap
ChIP K562 ENCFF524IJO 149 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 116 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 142 bp overlap
ChIP WTC11 ENCFF223QFY 149 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 149 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 149 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 67 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 149 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 149 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 149 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 103 bp overlap
POLR2A 3 datasets
ChIP prostate gland ENCFF545MVF 65 bp overlap
ChIP spleen ENCFF446ZGT 127 bp overlap
ChIP transverse colon ENCFF098HBD 64 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 144 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 149 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 149 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 146 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 145 bp overlap
SFPQ 2 datasets
ChIP LTAD_DHT-1nM GSE94577.SFPQ.LTAD_DHT-1nM 55 bp overlap
ChIP LTAD_siCTBP1-AS-EtOH GSE94577.SFPQ.LTAD_siCTBP1-AS-EtOH 145 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 149 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 149 bp overlap
YY1 1 dataset
ChIP liver ENCFF515BWJ 110 bp overlap
ZNF133 1 dataset
ChIP HEK293T GSE78099.ZNF133.HEK293T 125 bp overlap