chr2 : 205,770,465 – 205,770,982
517 bp 56 TFs 1 linked gene
This 517 bp open chromatin element is linked to NRP2-AS1 and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NRP2-AS1 6.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:205,765,465 – 205,775,982
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 59 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 450 bp overlap
BCL6 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 174 bp overlap
BHLHE22 1 dataset
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 185 bp overlap
BRD4 6 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 517 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 479 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 426 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 517 bp overlap
ChIP thyroid-cancer GSE114068.BRD4.thyroid-cancer 192 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 185 bp overlap
CTCF 3 datasets
ChIP endodermal cell ENCFF471YCZ 317 bp overlap
ChIP endodermal cell ENCFF471YCZ 458 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 181 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 176 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 251 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 286 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 295 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 312 bp overlap
EP300 1 dataset
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 102 bp overlap
ESR1 1 dataset
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 319 bp overlap
EZH2 3 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 417 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 484 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 502 bp overlap
FOXA1 4 datasets
ChIP MCF-7 GSE72249.FOXA1.MCF-7 115 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 75 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 146 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 140 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 328 bp overlap
ChIP DE DE-FOXA2-2 380 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 58 bp overlap
FOXF1 2 datasets
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 87 bp overlap
ChIP GIST48 GSE106624.FOXF1.GIST48 69 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 414 bp overlap
ChIP DE DE-GATA4-2 377 bp overlap
ChIP foregut GSE117136.GATA4.foregut 375 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 82 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 340 bp overlap
ChIP DE DE-GATA6-2 453 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 337 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 425 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 348 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 417 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 383 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 482 bp overlap
ChIP foregut GSE117136.GATA6.foregut 342 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 80 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 200 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 141 bp overlap
HMGB2 2 datasets
ChIP IMR-90_proliferating GSE98245.HMGB2.IMR-90_proliferating 235 bp overlap
ChIP IMR-90_senescent GSE98245.HMGB2.IMR-90_senescent 227 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 237 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 195 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 115 bp overlap
MAX 3 datasets
ChIP A549 ENCFF310XGQ 329 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 388 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 282 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 179 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 458 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 222 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 381 bp overlap
MXI1 1 dataset
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 120 bp overlap
MYC 2 datasets
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 248 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 148 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 54 bp overlap
MYOG 1 dataset
Motif DE_36h DE_36h-MYOG_MA0500.3 8 bp overlap
NR3C1 4 datasets
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 395 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 327 bp overlap
ChIP NALM-6_CASP1 GSE67046.NR3C1.NALM-6_CASP1 183 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 319 bp overlap
Neurod2 1 dataset
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 360 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 296 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 306 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 113 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 89 bp overlap
POLR2A 2 datasets
ChIP gastroesophageal sphincter ENCFF238INU 85 bp overlap
ChIP sigmoid colon ENCFF725QFT 335 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 163 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 170 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 297 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 307 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 141 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 95 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 343 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 293 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 267 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 446 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 436 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 279 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 222 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 234 bp overlap
Tcf12 1 dataset
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCSR465XQW.ZNF217.MCF-7 113 bp overlap
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